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Enable H5N1 in TheiaCoV & Augur #522

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AndrewLangvt opened this issue Jun 26, 2024 · 0 comments
Open

Enable H5N1 in TheiaCoV & Augur #522

AndrewLangvt opened this issue Jun 26, 2024 · 0 comments
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@AndrewLangvt
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AndrewLangvt commented Jun 26, 2024

馃啋

馃搶 Explain the Request

Enable analytical functionality for H5N1 in TheiaCoV workflow to run nextclade on H5N1s by default.

Set the default files (config, reference, etc.) used as part of the Augur pipeline in the organism_parameters subwf like we do for other pathogens to function with H5N1 data.

馃摎 Context

This is in support of the NE-PGCOE effort to build workflows/workspaces in support of future outbreaks.

馃搱 Desired Behavior

End users are able to analyze H5N1 data in Theiagen workflows

鈩癸笍 Additional Information

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