/
pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
name = "ngff-zarr"
description = 'A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.'
readme = "README.md"
requires-python = ">=3.8"
license = "MIT"
keywords = []
authors = [{ name = "Matt McCormick", email = "matt.mccormick@kitware.com" }]
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"Intended Audience :: Developers",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: Implementation :: CPython",
"Topic :: Scientific/Engineering",
]
dependencies = [
"dask[array]",
"itkwasm >= 1.0b171",
"itkwasm-downsample >= 1.2.0",
"numpy",
"platformdirs",
"psutil; sys_platform != \"emscripten\"",
"rich",
"typing_extensions",
"zarr",
]
dynamic = ["version"]
[project.urls]
Documentation = "https://github.com/thewtex/ngff-zarr#readme"
Issues = "https://github.com/thewtex/ngff-zarr/issues"
Source = "https://github.com/thewtex/ngff-zarr"
Changelog = "https://github.com/thewtex/ngff-zarr/releases"
[project.scripts]
ngff-zarr = "ngff_zarr.cli:main"
[tool.hatch.version]
path = "ngff_zarr/__about__.py"
[project.optional-dependencies]
dask-image = ["dask-image"]
itk = ["itk-filtering>=5.3.0"]
cli = [
"dask-image",
"dask[distributed]",
"itk-filtering>=5.3.0",
"itk-io>=5.3.0",
"itkwasm-image-io",
"imageio",
"tifffile",
"imagecodecs",
]
test = [
"pytest >=6",
"pre-commit",
"pooch",
"itk-io>=5.3.0",
"itkwasm-image-io",
"itk-filtering>=5.3.0",
"tifffile",
"jsonschema",
]
[tool.coverage.report]
run.source = ["ngff_zarr"]
report.exclude_lines = [
"no cov",
'\.\.\.',
"if __name__ == .__main__.:",
"if TYPE_CHECKING:",
]
[tool.pytest.ini_options]
minversion = "6.0"
filterwarnings = [
"ignore:(ast.Str|Attribute s|ast.NameConstant|ast.Num) is deprecated:DeprecationWarning:_pytest",
]
log_cli_level = "INFO"
testpaths = ["tests"]
[tool.ruff]
select = [
"E",
"F",
"W", # flake8
"B", # flake8-bugbear
"I", # isort
"ARG", # flake8-unused-arguments
"C4", # flake8-comprehensions
"EM", # flake8-errmsg
"ICN", # flake8-import-conventions
"ISC", # flake8-implicit-str-concat
"G", # flake8-logging-format
"PGH", # pygrep-hooks
"PIE", # flake8-pie
"PL", # pylint
"PT", # flake8-pytest-style
"PTH", # flake8-use-pathlib
"RET", # flake8-return
"RUF", # Ruff-specific
"SIM", # flake8-simplify
"T20", # flake8-print
"UP", # pyupgrade
"YTT", # flake8-2020
"EXE", # flake8-executable
"NPY", # NumPy specific rules
"PD", # pandas-vet
]
extend-ignore = [
"PLR", # Design related pylint codes
"E501", # Line too long
]
src = ["src"]
unfixable = [
"T20", # Removes print statements
"F841", # Removes unused variables
]
exclude = []
flake8-unused-arguments.ignore-variadic-names = true
line-length = 88
[tool.ruff.per-file-ignores]
"tests/**" = ["T20"]
[tool.pylint]
py-version = "3.8"
ignore-paths = ["src/ngff_zarr/__about__.py"]
reports.output-format = "colorized"
similarities.ignore-imports = "yes"
messages_control.disable = [
"design",
"fixme",
"line-too-long",
"missing-module-docstring",
"wrong-import-position",
]
[tool.black]
line-length = 88