assigner::assignment_ngs() - Error in dplyr::bind_rows(.) : Argument 1 must have names.

[Sapicq]

Dear Thierry,

Description of the bug
assigner::assignment_ngs does not work with the dataset data_assigner_sim_01 included in assigner - suspecting it is a dplyr issue. I tried dplyr v1.0.0 and the latest v1.0.10 without sucess.
I used the dataset included in assigner after having problems with my own dataset. I wanted to know if it was a problem with the formatting of my data (also dplyr related issue) or if it was the function.

To reproduce

library(assigner)
data<- data_assigner_sim_01
test1 <- assigner::assignment_ngs(
  data = data,
  assignment.analysis = "gsi_sim",
  markers.sampling = "ranked", 
 thl = 0.2,
 iteration.method = 5
)

error message

################################################################################
########################## assigner::assignment_ngs ############################
################################################################################
Execution date/time: 20221206@1917
Assignment analysis with gsi_sim
Subsampling: not selected
Conducting Assignment analysis using Training, Holdout, Leave-one-out
Using training samples to rank markers based on Fst
Holdout samples saved in your folder
Starting parallel computations, for progress monitor activity in folder...
Ranking markers based on Fst
Removing holdout individuals
Fst computation...
Error in dplyr::bind_rows(.) : Argument 1 must have names.

Computation time, overall: 6 sec
########################## assignment_ngs completed ############################

• output of devtools::session_info()

Session info ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 setting  value
 version  R version 4.2.1 (2022-06-23 ucrt)
 os       Windows Server 2012 R2 x64 (build 9600)
 system   x86_64, mingw32
 ui       Rgui
 language (EN)
 collate  English_United States.1252
 ctype    English_United States.1252
 tz       unknown
 date     2022-12-06
 pandoc   NA

- Packages -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 package     * version  date (UTC) lib source
 ade4          1.7-20   2022-11-01 [1] CRAN (R 4.2.2)
 adegenet      2.1.8    2022-10-02 [1] CRAN (R 4.2.2)
 ape           5.6-2    2022-03-02 [1] CRAN (R 4.2.1)
 assertthat    0.2.1    2019-03-21 [1] CRAN (R 4.2.1)
 assigner    * 0.5.8    2022-09-15 [1] Github (thierrygosselin/assigner@d39a692)
 bit           4.0.4    2020-08-04 [1] CRAN (R 4.2.1)
 bit64         4.0.5    2020-08-30 [1] CRAN (R 4.2.1)
 cachem        1.0.6    2021-08-19 [1] CRAN (R 4.2.1)
 callr         3.7.3    2022-11-02 [1] CRAN (R 4.2.2)
 carrier       0.1.0    2018-10-16 [1] CRAN (R 4.2.1)
 cli           3.4.1    2022-09-23 [1] CRAN (R 4.2.2)
 cluster       2.1.4    2022-08-22 [1] CRAN (R 4.2.1)
 codetools     0.2-18   2020-11-04 [2] CRAN (R 4.2.1)
 colorspace    2.0-3    2022-02-21 [1] CRAN (R 4.2.1)
 crayon        1.5.2    2022-09-29 [1] CRAN (R 4.2.2)
 curl          4.3.3    2022-10-06 [1] CRAN (R 4.2.2)
 data.table    1.14.4   2022-10-17 [1] CRAN (R 4.2.2)
 DBI           1.1.3    2022-06-18 [1] CRAN (R 4.2.1)
 devtools      2.4.5    2022-10-11 [1] CRAN (R 4.2.2)
 digest        0.6.30   2022-10-18 [1] CRAN (R 4.2.2)
 dplyr       * 1.0.10   2022-09-01 [1] CRAN (R 4.2.2)
 ellipsis      0.3.2    2021-04-29 [1] CRAN (R 4.2.1)
 fansi         1.0.3    2022-03-24 [1] CRAN (R 4.2.1)
 fastmap       1.1.0    2021-01-25 [1] CRAN (R 4.2.1)
 fs            1.5.2    2021-12-08 [1] CRAN (R 4.2.1)
 furrr         0.3.1    2022-08-15 [1] CRAN (R 4.2.1)
 future        1.29.0   2022-11-06 [1] CRAN (R 4.2.2)
 generics      0.1.3    2022-07-05 [1] CRAN (R 4.2.1)
 ggplot2       3.4.0    2022-11-04 [1] CRAN (R 4.2.2)
 globals       0.16.2   2022-11-21 [1] CRAN (R 4.2.2)
 glue          1.6.2    2022-02-24 [1] CRAN (R 4.2.1)
 gtable        0.3.1    2022-09-01 [1] CRAN (R 4.2.1)
 hms           1.1.2    2022-08-19 [1] CRAN (R 4.2.1)
 htmltools     0.5.3    2022-07-18 [1] CRAN (R 4.2.1)
 htmlwidgets   1.5.4    2021-09-08 [1] CRAN (R 4.2.1)
 httpuv        1.6.6    2022-09-08 [1] CRAN (R 4.2.1)
 igraph        1.3.5    2022-09-22 [1] CRAN (R 4.2.2)
 later         1.3.0    2021-08-18 [1] CRAN (R 4.2.1)
 lattice       0.20-45  2021-09-22 [2] CRAN (R 4.2.1)
 lifecycle     1.0.3    2022-10-07 [1] CRAN (R 4.2.2)
 listenv       0.8.0    2019-12-05 [1] CRAN (R 4.2.1)
 magrittr      2.0.3    2022-03-30 [1] CRAN (R 4.2.1)
 MASS          7.3-58.1 2022-08-03 [1] CRAN (R 4.2.1)
 Matrix        1.5-3    2022-11-11 [1] CRAN (R 4.2.2)
 memoise       2.0.1    2021-11-26 [1] CRAN (R 4.2.1)
 mgcv          1.8-40   2022-03-29 [2] CRAN (R 4.2.1)
 mime          0.12     2021-09-28 [1] CRAN (R 4.2.0)
 miniUI        0.1.1.1  2018-05-18 [1] CRAN (R 4.2.1)
 munsell       0.5.0    2018-06-12 [1] CRAN (R 4.2.1)
 nlme          3.1-160  2022-10-10 [1] CRAN (R 4.2.2)
 parallelly    1.32.1   2022-07-21 [1] CRAN (R 4.2.1)
 permute       0.9-7    2022-01-27 [1] CRAN (R 4.2.1)
 pillar        1.8.1    2022-08-19 [1] CRAN (R 4.2.1)
 pkgbuild      1.4.0    2022-11-27 [1] CRAN (R 4.2.2)
 pkgconfig     2.0.3    2019-09-22 [1] CRAN (R 4.2.1)
 pkgload       1.3.2    2022-11-16 [1] CRAN (R 4.2.2)
 plyr          1.8.8    2022-11-11 [1] CRAN (R 4.2.2)
 prettyunits   1.1.1    2020-01-24 [1] CRAN (R 4.2.1)
 processx      3.8.0    2022-10-26 [1] CRAN (R 4.2.2)
 profvis       0.3.7    2020-11-02 [1] CRAN (R 4.2.1)
 promises      1.2.0.1  2021-02-11 [1] CRAN (R 4.2.1)
 ps            1.7.2    2022-10-26 [1] CRAN (R 4.2.2)
 purrr         0.3.5    2022-10-06 [1] CRAN (R 4.2.2)
 R6            2.5.1    2021-08-19 [1] CRAN (R 4.2.1)
 radiator      1.2.4    2022-11-15 [1] Github (thierrygosselin/radiator@06ae13f)
 Rcpp          1.0.9    2022-07-08 [1] CRAN (R 4.2.1)
 readr         2.1.3    2022-10-01 [1] CRAN (R 4.2.2)
 remotes       2.4.2    2021-11-30 [1] CRAN (R 4.2.1)
 reshape2      1.4.4    2020-04-09 [1] CRAN (R 4.2.1)
 rlang         1.0.6    2022-09-24 [1] CRAN (R 4.2.2)
 scales        1.2.1    2022-08-20 [1] CRAN (R 4.2.1)
 seqinr        4.2-16   2022-05-19 [1] CRAN (R 4.2.1)
 sessioninfo   1.2.2    2021-12-06 [1] CRAN (R 4.2.1)
 shiny         1.7.3    2022-10-25 [1] CRAN (R 4.2.2)
 stringi       1.7.8    2022-07-11 [1] CRAN (R 4.2.1)
 stringr     * 1.5.0    2022-12-02 [1] CRAN (R 4.2.2)
 tibble        3.1.8    2022-07-22 [1] CRAN (R 4.2.1)
 tidyr         1.2.1    2022-09-08 [1] CRAN (R 4.2.1)
 tidyselect    1.2.0    2022-10-10 [1] CRAN (R 4.2.2)
 tzdb          0.3.0    2022-03-28 [1] CRAN (R 4.2.1)
 urlchecker    1.0.1    2021-11-30 [1] CRAN (R 4.2.1)
 usethis       2.1.6    2022-05-25 [1] CRAN (R 4.2.1)
 utf8          1.2.2    2021-07-24 [1] CRAN (R 4.2.1)
 vctrs         0.5.0    2022-10-22 [1] CRAN (R 4.2.2)
 vegan         2.6-4    2022-10-11 [1] CRAN (R 4.2.2)
 vroom         1.6.0    2022-09-30 [1] CRAN (R 4.2.2)
 withr         2.5.0    2022-03-03 [1] CRAN (R 4.2.1)
 xtable        1.8-4    2019-04-21 [1] CRAN (R 4.2.1)

 [1] C:/Users/Admin/AppData/Local/R/win-library/4.2
 [2] C:/Program Files/R/R-4.2.1/library

---------------------------------------------------------------------------------

Thank you for the help

Have a good day

Sandrine

[thierrygosselin]

Thanks for reporting the bug Sandrine, I'll have a look at it this morning

[PaulineSnor]

Hi Thierry,

Have you had a chance to look at this error yet ?
I would like to use your package but I run into the same issue as Sapicq while going through the tutorial.

Thanks,

Pauline