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admix.3
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admix.3
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Cross-validation will be performed. Folds=10.
Random seed: 43
Point estimation method: Block relaxation algorithm
Convergence acceleration algorithm: QuasiNewton, 3 secant conditions
Point estimation will terminate when objective function delta < 0.0001
Estimation of standard errors disabled; will compute point estimates only.
**** ADMIXTURE Version 1.23 ****
**** Copyright 2008-2013 ****
**** David Alexander, John Novembre, Ken Lange ****
**** Please cite our paper! ****
**** Information at www.genetics.ucla.edu/software/admixture ****
Size of G: 988x55248
Performing five EM steps to prime main algorithm
1 (EM) Elapsed: 6.557 Loglikelihood: -4.9993e+07 (delta): 3.78331e+07
2 (EM) Elapsed: 12.016 Loglikelihood: -4.85167e+07 (delta): 1.47625e+06
3 (EM) Elapsed: 15.027 Loglikelihood: -4.80901e+07 (delta): 426635
4 (EM) Elapsed: 13.806 Loglikelihood: -4.78482e+07 (delta): 241856
5 (EM) Elapsed: 14.41 Loglikelihood: -4.76931e+07 (delta): 155171
Initial loglikelihood: -4.76931e+07
Starting main algorithm
1 (QN/Block) Elapsed: 26.815 Loglikelihood: -4.52039e+07 (delta): 2.48918e+06
2 (QN/Block) Elapsed: 27.394 Loglikelihood: -4.47329e+07 (delta): 470992
3 (QN/Block) Elapsed: 28.71 Loglikelihood: -4.44776e+07 (delta): 255276
4 (QN/Block) Elapsed: 30.877 Loglikelihood: -4.43682e+07 (delta): 109440
5 (QN/Block) Elapsed: 33.433 Loglikelihood: -4.43535e+07 (delta): 14664
6 (QN/Block) Elapsed: 30.704 Loglikelihood: -4.43511e+07 (delta): 2384.78
7 (QN/Block) Elapsed: 33.159 Loglikelihood: -4.43508e+07 (delta): 319.734
8 (QN/Block) Elapsed: 30.009 Loglikelihood: -4.43508e+07 (delta): 24.6988
9 (QN/Block) Elapsed: 33.811 Loglikelihood: -4.43508e+07 (delta): 1.669
10 (QN/Block) Elapsed: 30.472 Loglikelihood: -4.43508e+07 (delta): 0.0222016
11 (QN/Block) Elapsed: 30.147 Loglikelihood: -4.43508e+07 (delta): 0.00104266
12 (QN/Block) Elapsed: 31.061 Loglikelihood: -4.43508e+07 (delta): 4.50313e-05
Summary:
Converged in 12 iterations (451.546 sec)
Loglikelihood: -44350782.266783
Fst divergences between estimated populations:
Pop0 Pop1
Pop0
Pop1 0.117
Pop2 0.089 0.102
CV error (K=3): 0.44816
Writing output files.