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admix.4
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admix.4
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Cross-validation will be performed. Folds=10.
Random seed: 43
Point estimation method: Block relaxation algorithm
Convergence acceleration algorithm: QuasiNewton, 3 secant conditions
Point estimation will terminate when objective function delta < 0.0001
Estimation of standard errors disabled; will compute point estimates only.
**** ADMIXTURE Version 1.23 ****
**** Copyright 2008-2013 ****
**** David Alexander, John Novembre, Ken Lange ****
**** Please cite our paper! ****
**** Information at www.genetics.ucla.edu/software/admixture ****
Size of G: 988x55248
Performing five EM steps to prime main algorithm
1 (EM) Elapsed: 12.602 Loglikelihood: -5.00686e+07 (delta): 3.47794e+07
2 (EM) Elapsed: 17.442 Loglikelihood: -4.8595e+07 (delta): 1.47357e+06
3 (EM) Elapsed: 17.868 Loglikelihood: -4.82052e+07 (delta): 389878
4 (EM) Elapsed: 17.384 Loglikelihood: -4.79752e+07 (delta): 229956
5 (EM) Elapsed: 17.489 Loglikelihood: -4.78155e+07 (delta): 159722
Initial loglikelihood: -4.78155e+07
Starting main algorithm
1 (QN/Block) Elapsed: 32.18 Loglikelihood: -4.50124e+07 (delta): 2.80303e+06
2 (QN/Block) Elapsed: 32.641 Loglikelihood: -4.45e+07 (delta): 512403
3 (QN/Block) Elapsed: 34.241 Loglikelihood: -4.43123e+07 (delta): 187714
4 (QN/Block) Elapsed: 35.696 Loglikelihood: -4.4213e+07 (delta): 99359.5
5 (QN/Block) Elapsed: 37.196 Loglikelihood: -4.41937e+07 (delta): 19241.3
6 (QN/Block) Elapsed: 36.407 Loglikelihood: -4.41873e+07 (delta): 6377.56
7 (QN/Block) Elapsed: 37.067 Loglikelihood: -4.41844e+07 (delta): 2924.04
8 (QN/Block) Elapsed: 41.189 Loglikelihood: -4.4184e+07 (delta): 427.194
9 (QN/Block) Elapsed: 38.519 Loglikelihood: -4.41839e+07 (delta): 61.1342
10 (QN/Block) Elapsed: 35.302 Loglikelihood: -4.41839e+07 (delta): 11.4541
11 (QN/Block) Elapsed: 36.182 Loglikelihood: -4.41839e+07 (delta): 1.97608
12 (QN/Block) Elapsed: 35.959 Loglikelihood: -4.41839e+07 (delta): 0.258663
13 (QN/Block) Elapsed: 36.659 Loglikelihood: -4.41839e+07 (delta): 0.0157565
14 (QN/Block) Elapsed: 36.316 Loglikelihood: -4.41839e+07 (delta): 0.000655517
15 (QN/Block) Elapsed: 34.247 Loglikelihood: -4.41839e+07 (delta): 7.8544e-05
Summary:
Converged in 15 iterations (653.231 sec)
Loglikelihood: -44183923.699957
Fst divergences between estimated populations:
Pop0 Pop1 Pop2
Pop0
Pop1 0.090
Pop2 0.122 0.107
Pop3 0.102 0.075 0.033
CV error (K=4): 0.44617
Writing output files.