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admix.6
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admix.6
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Cross-validation will be performed. Folds=10.
Random seed: 43
Point estimation method: Block relaxation algorithm
Convergence acceleration algorithm: QuasiNewton, 3 secant conditions
Point estimation will terminate when objective function delta < 0.0001
Estimation of standard errors disabled; will compute point estimates only.
**** ADMIXTURE Version 1.23 ****
**** Copyright 2008-2013 ****
**** David Alexander, John Novembre, Ken Lange ****
**** Please cite our paper! ****
**** Information at www.genetics.ucla.edu/software/admixture ****
Size of G: 988x55248
Performing five EM steps to prime main algorithm
1 (EM) Elapsed: 26.425 Loglikelihood: -4.99679e+07 (delta): 3.17356e+07
2 (EM) Elapsed: 26.345 Loglikelihood: -4.8531e+07 (delta): 1.43694e+06
3 (EM) Elapsed: 26.624 Loglikelihood: -4.82072e+07 (delta): 323840
4 (EM) Elapsed: 25.973 Loglikelihood: -4.80163e+07 (delta): 190865
5 (EM) Elapsed: 25.814 Loglikelihood: -4.78758e+07 (delta): 140534
Initial loglikelihood: -4.78758e+07
Starting main algorithm
1 (QN/Block) Elapsed: 50.218 Loglikelihood: -4.48105e+07 (delta): 3.06523e+06
2 (QN/Block) Elapsed: 50.343 Loglikelihood: -4.42556e+07 (delta): 554983
3 (QN/Block) Elapsed: 55.349 Loglikelihood: -4.40721e+07 (delta): 183463
4 (QN/Block) Elapsed: 54 Loglikelihood: -4.40021e+07 (delta): 70027.7
5 (QN/Block) Elapsed: 61.449 Loglikelihood: -4.39807e+07 (delta): 21378.2
6 (QN/Block) Elapsed: 57.469 Loglikelihood: -4.39699e+07 (delta): 10804.5
7 (QN/Block) Elapsed: 58.808 Loglikelihood: -4.39623e+07 (delta): 7606.73
8 (QN/Block) Elapsed: 59.7 Loglikelihood: -4.39561e+07 (delta): 6168.72
9 (QN/Block) Elapsed: 59.18 Loglikelihood: -4.39513e+07 (delta): 4837.29
10 (QN/Block) Elapsed: 61.495 Loglikelihood: -4.3947e+07 (delta): 4272.27
11 (QN/Block) Elapsed: 60.51 Loglikelihood: -4.39406e+07 (delta): 6386.05
12 (QN/Block) Elapsed: 59.768 Loglikelihood: -4.39349e+07 (delta): 5659.74
13 (QN/Block) Elapsed: 60.087 Loglikelihood: -4.39295e+07 (delta): 5438.25
14 (QN/Block) Elapsed: 61.608 Loglikelihood: -4.39254e+07 (delta): 4101.49
15 (QN/Block) Elapsed: 53.146 Loglikelihood: -4.39223e+07 (delta): 3079.82
16 (QN/Block) Elapsed: 50 Loglikelihood: -4.3918e+07 (delta): 4348.9
17 (QN/Block) Elapsed: 53.001 Loglikelihood: -4.39167e+07 (delta): 1285.86
18 (QN/Block) Elapsed: 50.378 Loglikelihood: -4.39157e+07 (delta): 1024.26
19 (QN/Block) Elapsed: 48.011 Loglikelihood: -4.39151e+07 (delta): 550.691
20 (QN/Block) Elapsed: 40.1 Loglikelihood: -4.39147e+07 (delta): 409.876
21 (QN/Block) Elapsed: 39.442 Loglikelihood: -4.39143e+07 (delta): 386.075
22 (QN/Block) Elapsed: 43.236 Loglikelihood: -4.39141e+07 (delta): 196.277
23 (QN/Block) Elapsed: 37.665 Loglikelihood: -4.39141e+07 (delta): 66.203
24 (QN/Block) Elapsed: 36.754 Loglikelihood: -4.39141e+07 (delta): 4.58356
25 (QN/Block) Elapsed: 38.887 Loglikelihood: -4.39141e+07 (delta): 0.489775
26 (QN/Block) Elapsed: 43.672 Loglikelihood: -4.39141e+07 (delta): 0.0563653
27 (QN/Block) Elapsed: 36.181 Loglikelihood: -4.39141e+07 (delta): 0.0253868
28 (QN/Block) Elapsed: 35.31 Loglikelihood: -4.39141e+07 (delta): 0.0177587
29 (QN/Block) Elapsed: 39.683 Loglikelihood: -4.39141e+07 (delta): 0.0562965
30 (QN/Block) Elapsed: 30.255 Loglikelihood: -4.39141e+07 (delta): 0.871289
31 (QN/Block) Elapsed: 36.358 Loglikelihood: -4.39141e+07 (delta): 0.0329206
32 (QN/Block) Elapsed: 23.454 Loglikelihood: -4.39141e+07 (delta): 0.0169385
33 (QN/Block) Elapsed: 33.223 Loglikelihood: -4.39141e+07 (delta): 0.000414222
34 (QN/Block) Elapsed: 32.242 Loglikelihood: -4.39141e+07 (delta): 4.67747e-05
Summary:
Converged in 34 iterations (1805.45 sec)
Loglikelihood: -43914053.792082
Fst divergences between estimated populations:
Pop0 Pop1 Pop2 Pop3 Pop4
Pop0
Pop1 0.123
Pop2 0.092 0.110
Pop3 0.103 0.033 0.078
Pop4 0.069 0.104 0.041 0.078
Pop5 0.072 0.120 0.066 0.097 0.066
CV error (K=6): 0.44346
Writing output files.