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admix.7
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admix.7
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Cross-validation will be performed. Folds=10.
Random seed: 43
Point estimation method: Block relaxation algorithm
Convergence acceleration algorithm: QuasiNewton, 3 secant conditions
Point estimation will terminate when objective function delta < 0.0001
Estimation of standard errors disabled; will compute point estimates only.
**** ADMIXTURE Version 1.23 ****
**** Copyright 2008-2013 ****
**** David Alexander, John Novembre, Ken Lange ****
**** Please cite our paper! ****
**** Information at www.genetics.ucla.edu/software/admixture ****
Size of G: 988x55248
Performing five EM steps to prime main algorithm
1 (EM) Elapsed: 31.22 Loglikelihood: -4.98723e+07 (delta): 3.09515e+07
2 (EM) Elapsed: 32.908 Loglikelihood: -4.84631e+07 (delta): 1.40919e+06
3 (EM) Elapsed: 33.451 Loglikelihood: -4.81779e+07 (delta): 285270
4 (EM) Elapsed: 30.345 Loglikelihood: -4.80103e+07 (delta): 167531
5 (EM) Elapsed: 31.471 Loglikelihood: -4.78836e+07 (delta): 126754
Initial loglikelihood: -4.78836e+07
Starting main algorithm
1 (QN/Block) Elapsed: 62.054 Loglikelihood: -4.47359e+07 (delta): 3.14767e+06
2 (QN/Block) Elapsed: 61.89 Loglikelihood: -4.42469e+07 (delta): 488975
3 (QN/Block) Elapsed: 70.386 Loglikelihood: -4.40644e+07 (delta): 182514
4 (QN/Block) Elapsed: 68.489 Loglikelihood: -4.39493e+07 (delta): 115117
5 (QN/Block) Elapsed: 74.278 Loglikelihood: -4.39205e+07 (delta): 28806.1
6 (QN/Block) Elapsed: 67.472 Loglikelihood: -4.3907e+07 (delta): 13464.8
7 (QN/Block) Elapsed: 67.432 Loglikelihood: -4.39001e+07 (delta): 6927.51
8 (QN/Block) Elapsed: 66.664 Loglikelihood: -4.38943e+07 (delta): 5766.49
9 (QN/Block) Elapsed: 66.75 Loglikelihood: -4.38885e+07 (delta): 5822.29
10 (QN/Block) Elapsed: 70.161 Loglikelihood: -4.38812e+07 (delta): 7349.06
11 (QN/Block) Elapsed: 72.91 Loglikelihood: -4.38765e+07 (delta): 4698.68
12 (QN/Block) Elapsed: 70.921 Loglikelihood: -4.38723e+07 (delta): 4184.28
13 (QN/Block) Elapsed: 56.624 Loglikelihood: -4.3868e+07 (delta): 4289.18
14 (QN/Block) Elapsed: 60.224 Loglikelihood: -4.38636e+07 (delta): 4383.15
15 (QN/Block) Elapsed: 59.54 Loglikelihood: -4.38587e+07 (delta): 4910.88
16 (QN/Block) Elapsed: 52.447 Loglikelihood: -4.38564e+07 (delta): 2290.78
17 (QN/Block) Elapsed: 50.165 Loglikelihood: -4.38558e+07 (delta): 636.639
18 (QN/Block) Elapsed: 49.18 Loglikelihood: -4.38555e+07 (delta): 259.526
19 (QN/Block) Elapsed: 48.757 Loglikelihood: -4.38551e+07 (delta): 377.457
20 (QN/Block) Elapsed: 48.644 Loglikelihood: -4.3855e+07 (delta): 167.436
21 (QN/Block) Elapsed: 45.796 Loglikelihood: -4.38549e+07 (delta): 41.9469
22 (QN/Block) Elapsed: 48.414 Loglikelihood: -4.38549e+07 (delta): 25.6421
23 (QN/Block) Elapsed: 45.042 Loglikelihood: -4.38549e+07 (delta): 1.7407
24 (QN/Block) Elapsed: 47.272 Loglikelihood: -4.38549e+07 (delta): 0.220944
25 (QN/Block) Elapsed: 42.518 Loglikelihood: -4.38549e+07 (delta): 0.0704787
26 (QN/Block) Elapsed: 34.398 Loglikelihood: -4.38549e+07 (delta): 0.0309114
27 (QN/Block) Elapsed: 33.44 Loglikelihood: -4.38549e+07 (delta): 0.00567329
28 (QN/Block) Elapsed: 32.911 Loglikelihood: -4.38549e+07 (delta): 0.00067243
29 (QN/Block) Elapsed: 31.717 Loglikelihood: -4.38549e+07 (delta): 7.27028e-05
Summary:
Converged in 29 iterations (1826.69 sec)
Loglikelihood: -43854903.564518
Fst divergences between estimated populations:
Pop0 Pop1 Pop2 Pop3 Pop4 Pop5
Pop0
Pop1 0.071
Pop2 0.124 0.104
Pop3 0.104 0.078 0.033
Pop4 0.093 0.041 0.110 0.078
Pop5 0.015 0.073 0.127 0.107 0.095
Pop6 0.075 0.066 0.120 0.097 0.066 0.075
CV error (K=7): 0.44335
Writing output files.