Merge 4cfecea into d449ffc

mhcgnomes/data/gene_aliases.yaml

@@ -73,4 +73,9 @@ Gaga:
   # for Gaga-BF2"
   Chi-B: BF2
   YF1w: YF1
-  YF2w: YF2
+  YF2w: YF2
+FLA:
+  DRA: DRA1
+  DRB: DRB1
+  DPA: DPA1
+  DPB: DPB1

mhcgnomes/data/species.yaml

@@ -344,10 +344,42 @@ Canis simensis:
 #
 # Felidae
 #
+# Sources:
+# - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7375346/
+#
 ############################
 Felis sp.:
   prefix: FLA
   name: Cat
+  genes:
+    Ia:
+      - E
+      - H
+      - K
+    Ib:
+      - A
+      - C
+      - F
+      - J
+      - L
+      - M
+      - O
+      - Q
+      - S
+    IIa:
+      DP:
+        - DPA1
+        - DPB1
+      DR:
+        - DRA1
+        - DRB1
+    IIb:
+      DO:
+        - DOA
+        - DOB
+      DM:
+        - DMA
+        - DMB
 Felis catus:
   parent: Felis sp.
   prefix: Feca

mhcgnomes/version.py

@@ -1 +1 @@
-__version__ = "1.5.0"
+__version__ = "1.6.0"

test/test_cat.py

@@ -0,0 +1,6 @@
+from mhcgnomes import parse
+from nose.tools import eq_
+
+def test_parse_FLA_E_18_01():
+    s = "FLA-E*18:01"
+    eq_(parse(s, verbose=True).to_string(), s)

test/test_cow.py

@@ -25,3 +25,4 @@ def test_parse_BoLA_N_001001_with_colon_sep():
     eq_(allele.species.prefix, "BoLA")
     eq_(allele.gene.name, "N")
     eq_(allele.allele_fields, ("001", "01"))
+

test/test_horse.py

@@ -1,4 +1,4 @@
-from mhcgnomes import parse, Haplotype
+from mhcgnomes import parse, Haplotype, Allele
 from nose.tools import eq_
 
 def test_parse_haplotype_ELA_A1():
@@ -14,3 +14,4 @@ def test_parse_haplotype_ELA_A1_lowercase():
     assert type(result) is Haplotype
     eq_(result.name, "A1")
     assert result.species.is_horse
+