added some BoLA and Caja genes

pirl-unc · Nov 12, 2020 · 3b8f98b · 3b8f98b
1 parent 5d68008
commit 3b8f98b
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Showing 2 changed files with 17 additions and 1 deletion.
diff --git a/mhcgnomes/data/species.yaml b/mhcgnomes/data/species.yaml
@@ -467,6 +467,12 @@ Bos sp.:
       - NC3
       - NC4
       - NC5
+      - NC6
+      - NC7
+      - NC8
+      - NC8
+      - NC9
+      - NC10
     Id:
       - CD1b3
       - CD1d
@@ -1018,6 +1024,12 @@ Ateles fusciceps:
 Callithrix sp.:
   prefix: MaLA
   name: Marmoset
+  # TODO:
+  #   - Harmonize with this gene table
+  #       https://www.jimmunol.org/content/192/7/3239/tab-figures-data
+  #   - Figure out what to do with the optional "Ps" suffix on some
+  #     genes or more generally whether we should be tracking pseudogene
+  #     status in this ontology
   genes:
     Ia:
       - B
@@ -1033,6 +1045,10 @@ Callithrix sp.:
     Ib:
       - E
       - F
+      - F4
+      - F5
+      - F6
+      - F7
       - F1Ps
       - F2Ps
       - F3Ps

diff --git a/mhcgnomes/version.py b/mhcgnomes/version.py
@@ -1 +1 @@
-__version__ = "1.2.1"
+__version__ = "1.2.2"