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Copied human allele aliases from IMGT #7

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merged 12 commits into from
Nov 23, 2020
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iskandr
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@iskandr iskandr commented Nov 22, 2020

  • Added https://www.ebi.ac.uk/cgi-bin/ipd/imgt/hla/deleted.cgi to allele_aliases.yaml
  • Got rid of null aliases (e.g. 1*CHANGDA: ~) and replaced with known_alleles.yaml of alleles that don't follow any format but should be preserved as written.
  • Added only_class1 and only_class2 options to parse()
  • Exposed Parser verbose option to function API
  • Renamed map_allele_aliases to use_allele_aliases
  • Moved application of transform_parse_candidates to final step in parsing pipeline before filtering of candidates in Parser.parse
  • Apply transform_parse_candidates to alleles contained in Haplotype, Serotype, and Class2Pair.
  • Set use_allele_aliases to False by default

@iskandr iskandr merged commit b5d8581 into main Nov 23, 2020
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