A gentle tutorial of accelerated parameter and confidence interval estimation for Hidden Markov Models using Template Model Builder

Contributors: Timothee Bacri¹, Geir Drage Berentsen², Jan Bulla¹ and Sondre Hølleland³.

1. University of Bergen, Norway.
2. Norwegian Business school, Norway.
3. Institute of Marine Research, Norway.

Correspondance to: jan.bulla@uib.no

This repository contains the code to produce the R-bookdown website found here.

The folders (code/, data/, functions/) related to the analysis code and results of the paper https://doi.org/10.1002/bimj.202100256 are described in Directory structure.

The folders inside (paper2-github-preprint/) follow a similar structure, but concern a (second) paper https://doi.org/10.1080/00949655.2023.2226788.

Author’s github account

Timothee Bacri - timothee-bacri

Sondre Hølleland - holleland

Geir Berentsen - gberentsen

License

This project is licensed under the GPL v2 License - see LICENSE for details.