Running AlphaFold with Docker

Setup of the alphafold casp13 model is only for linux, this tool allows anyone with docker (mac,pc,etc) to run the model.

Installation:

• Install Docker for Mac

• Download this code

  curl -L https://github.com/tjake/DockerFold/archive/master.zip --output dockerfold.zip

  unzip dockerfold.zip

  cd DockerFold-master

• Download the model data (45GB)

  curl -L http://bit.ly/alphafold-casp13-data --output data.zip

• Unzip data into same directory

  unzip data.zip -d data

• Run model and generate output (first run will build the docker image)

  ./run.sh -i data -t T1019s2 -o output_T1019s2

  This will take many hours to run!