Phenotype

Directories:

• Ards: Methods for phenotyping Acute Respiratory Distress Syndrome
• Codes: Methods for training a DAN to predict ICD codes from CUIs extracted from text
• Comorbidity: Methods for applying trained networks to i2b2 NLP Challenge on Obesity and Comorbidity Extraction (2008)
• Lib: Utilities for reading CUI files
• Patient: Methods for applying trained models to files of CUIs, one patient per file, one cui per line.
• Svd: Methods for creating patient representations with a singular value decompostion over CUI matrix.