template.tex

\documentclass[$if(fontsize)$$fontsize$,$endif$$if(lang)$$lang$,$endif$$if(papersize)$$papersize$,$endif$$for(classoption)$$classoption$$sep$,$endfor$]{$documentclass$}

% Template based on https://github.com/jgm/pandoc-templates/blob/master/default.latex

$if(fontfamily)$
  \usepackage{$fontfamily$}
$else$
  \usepackage{lmodern}
$endif$

$if(spacing)$
  \usepackage[$spacing$]{setspace}
$endif$

\usepackage{amssymb,amsmath}
\usepackage{ifxetex,ifluatex}
\usepackage{fixltx2e} % provides \textsubscript

% Code Listings

\usepackage{listings}
\usepackage{color}

\definecolor{mygreen}{rgb}{0,0.6,0}
\definecolor{mygray}{rgb}{0.5,0.5,0.5}
\definecolor{mymauve}{rgb}{0.58,0,0.82}

\lstset{ %
  backgroundcolor=\color{white},   % choose the background color; you must add \usepackage{color} or \usepackage{xcolor}
  basicstyle=\footnotesize,        % the size of the fonts that are used for the code
  breakatwhitespace=false,         % sets if automatic breaks should only happen at whitespace
  breaklines=true,                 % sets automatic line breaking
  captionpos=b,                    % sets the caption-position to bottom
  commentstyle=\color{mygreen},    % comment style
  deletekeywords={...},            % if you want to delete keywords from the given language
  escapeinside={\%*}{*)},          % if you want to add LaTeX within your code
  extendedchars=true,              % lets you use non-ASCII characters; for 8-bits encodings only, does not work with UTF-8
  frame=single,                    % adds a frame around the code
  keepspaces=true,                 % keeps spaces in text, useful for keeping indentation of code (possibly needs columns=flexible)
  keywordstyle=\color{blue},       % keyword style
  language=Octave,                 % the language of the code
  morekeywords={*,...},            % if you want to add more keywords to the set
  numbers=left,                    % where to put the line-numbers; possible values are (none, left, right)
  numbersep=5pt,                   % how far the line-numbers are from the code
  numberstyle=\tiny\color{mygray}, % the style that is used for the line-numbers
  rulecolor=\color{black},         % if not set, the frame-color may be changed on line-breaks within not-black text (e.g. comments (green here))
  showspaces=false,                % show spaces everywhere adding particular underscores; it overrides 'showstringspaces'
  showstringspaces=false,          % underline spaces within strings only
  showtabs=false,                  % show tabs within strings adding particular underscores
  stepnumber=2,                    % the step between two line-numbers. If it's 1, each line will be numbered
  stringstyle=\color{mymauve},     % string literal style
  tabsize=2,                       % sets default tabsize to 2 spaces
  title=\lstname                   % show the filename of files included with \lstinputlisting; also try caption instead of title
}

% Tables
\usepackage{longtable,booktabs}

\usepackage{graphicx}
% Redefine \includegraphics so that, unless explicit options are
% given, the image width will not exceed the width or the height of the page.
% Images get their normal width if they fit onto the page, but
% are scaled down if they would overflow the margins.
\makeatletter
\def\ScaleWidthIfNeeded{%
 \ifdim\Gin@nat@width>\linewidth
    \linewidth
  \else
    \Gin@nat@width
  \fi
}
\def\ScaleHeightIfNeeded{%
  \ifdim\Gin@nat@height>0.9\textheight
    0.9\textheight
  \else
    \Gin@nat@width
  \fi
}
\makeatother

\setkeys{Gin}{width=\ScaleWidthIfNeeded,height=\ScaleHeightIfNeeded,keepaspectratio}%

% Margins of chapter heading
$if(chapterheadstartvskip)$
  \renewcommand*{\chapterheadstartvskip}{\vspace*{$chapterheadstartvskip$}}
$endif$
$if(chapterheadendvskip)$
  \renewcommand*{\chapterheadendvskip}{\vspace{$chapterheadendvskip$}}
$endif$

\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}

% Package to set page headers and footers
$if(scrlayer-scrpage)$
  \usepackage[automark,headsepline]{scrlayer-scrpage}
  $for(scrlayer-scrpage)$
    $scrlayer-scrpage$
  $endfor$
$endif$

$if(euro)$
  \usepackage{eurosym}
$endif$

$if(mainfont)$
  \setmainfont{$mainfont$}
$endif$

$if(sansfont)$
  \setsansfont{$sansfont$}
$endif$

$if(monofont)$
  \setmonofont[Mapping=tex-ansi]{$monofont$}
$endif$

$if(mathfont)$
  \setmathfont(Digits,Latin,Greek){$mathfont$}
$endif$

$if(geometry)$
  \usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
$endif$

$if(natbib)$
  \usepackage{natbib}
  \bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
$endif$

$if(biblatex)$
  \usepackage[backend=biber,style=$if(biblio-style)$$biblio-style$$else$alphabetic$endif$]{biblatex}
  $if(biblio-files)$
    \addbibresource{$biblio-files$}
  $endif$
$endif$

$if(highlighting-macros)$
  $highlighting-macros$
$endif$

$if(verbatim-in-note)$
  \usepackage{fancyvrb}
  \VerbatimFootnotes
$endif$


\usepackage[unicode=true]{hyperref}

\hypersetup{breaklinks=true,
            pdfauthor={$author-meta$},
            pdftitle={$title-meta$},
            colorlinks=true,
            citecolor=$if(citecolor)$$citecolor$$else$blue$endif$,
            urlcolor=$if(urlcolor)$$urlcolor$$else$blue$endif$,
            linkcolor=$if(linkcolor)$$linkcolor$$else$magenta$endif$,
            pdfborder={0 0 0}}

\urlstyle{same}  % don't use monospace font for urls

$if(links-as-notes)$
  % Make links footnotes instead of hotlinks:
  \renewcommand{\href}[2]{#2\footnote{\url{#1}}}
$endif$

$if(strikeout)$
  \usepackage[normalem]{ulem}
  % avoid problems with \sout in headers with hyperref:
  \pdfstringdefDisableCommands{\renewcommand{\sout}{}}
$endif$

\setlength{\parindent}{0pt}
\setlength{\parskip}{6pt plus 2pt minus 1pt}
\setlength{\emergencystretch}{3em}  % prevent overfull lines

$if(numbersections)$
  \setcounter{secnumdepth}{5}
$else$
  \setcounter{secnumdepth}{0}
$endif$

$if(verbatim-in-note)$
  \VerbatimFootnotes % allows verbatim text in footnotes
$endif$

$for(header-includes)$
  $header-includes$
$endfor$

\begin{document}

\frontmatter

$for(include-before)$
  \input{$include-before$}
$endfor$

\clearpage

$if(toc)$
  \hypersetup{linkcolor=black}
  \setcounter{tocdepth}{$toc-depth$}
  \newgeometry{left=3cm,right=2.5cm, top=1.5cm, bottom=3cm}
    \tableofcontents
    \pagestyle{plain}
    \cleardoublepage
$endif$

$if(lot)$
  \newgeometry{left=3cm,right=2.5cm, top=1.5cm, bottom=3cm}
    \listoftables
  \restoregeometry
  \clearpage
$endif$

$if(lof)$
  \newgeometry{left=3cm,right=2.5cm, top=1.5cm, bottom=3cm}
    \listoffigures
  \restoregeometry
  \clearpage
$endif$

$if(scrlayer-scrpage)$
  $for(scrlayer-scrpage)$
    $scrlayer-scrpage$
  $endfor$
$endif$

\mainmatter

$body$

$for(include-chapters)$
  \input($include-chapters$)
$endfor$

$if(biblatex)$
  \printbibliography$if(biblio-title)$[title=$biblio-title$]$endif$
$endif$

\backmatter

$for(include-after)$
  \input{$include-after$}
$endfor$

\end{document}