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SSTAR is over-reporting AR variants in some instances. Although it is possible the same contig would harbor >1 AR gene sequence, the example given below is where the same region is flagged as two different AR variants. One, but not both should be reported from the example SSTAR output below.
SSTAR is over-reporting AR variants in some instances. Although it is possible the same contig would harbor >1 AR gene sequence, the example given below is where the same region is flagged as two different AR variants. One, but not both should be reported from the example SSTAR output below.
Example SSTAR output:
Gene Contig Seq similarity Alignment length Gene length
CatB3 SAMN04014842_47 100.00% 442 633
CatB4 SAMN04014842_47 100.00% 497 549
It doesn't look like this is a bug in the java script but rather a lack of handling this case.
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