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.travis.yml
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language: cpp
cache: ccache
matrix:
include:
# list of configurations to be attempted:
# MPI + doc
# this is the "master" one, it is going to update the manual every time
# Variable PLUMED_ALL_TESTS=yes ensures that all the regtests can be run.
# If some of them is not enabled, the whole suite will fail.
- os: linux
dist: trusty
sudo: required
env: PLUMED_CC=mpicc PLUMED_CXX=mpic++ MAKEDOC=yes PLUMED_ALL_TESTS=yes LAPACK=yes ASMJIT=673dcefa
# coverage scan
- os: linux
dist: trusty
sudo: required
env: PLUMED_CC=mpicc PLUMED_CXX=mpic++ MAKECOVERAGE=yes PLUMED_ALL_TESTS=yes
# the following are with debug flags
- os: linux
dist: trusty
sudo: required
env: PLUMED_CC=gcc PLUMED_CXX=g++ CONFIG_FLAGS="--enable-debug --enable-debug-glibcxx"
- os: linux
dist: trusty
sudo: required
env: PLUMED_CC=mpicc PLUMED_CXX=mpic++ CONFIG_FLAGS="--enable-debug --enable-debug-glibcxx"
# cppcheck
- os: linux
dist: trusty
sudo: required
env: CPPCHECK=yes CPPCHECK_VERSION=1.87
# test using external blas with internal lapack
- os: linux
if: branch =~ ^test- OR type IN(pull_request)
dist: trusty
sudo: required
env: PLUMED_CC=mpicc PLUMED_CXX=mpic++ PLUMED_CXXFLAGS=-O3 LAPACK=yes CONFIG_FLAGS="--disable-external-lapack"
# test using docker image.
# currently it means ubuntu 17, with gcc6
- sudo: required
if: branch =~ ^test- OR type IN(pull_request)
services: docker
env: PLUMED_DOCKER=yes
# osx serial
- os: osx
if: branch =~ ^test- OR type IN(pull_request)
osx_image: xcode7.3
env: PLUMED_CC=clang PLUMED_CXX=clang++ PLUMED_CXXFLAGS=-O3
# this should not be required. I add it since it looks like with OSX it does not work otherwise
cache:
directories:
- $HOME/.ccache
# osx parallel
- os: osx
if: branch =~ ^test- OR type IN(pull_request)
osx_image: xcode7.3
env: PLUMED_CC=mpicc PLUMED_CXX=mpic++ PLUMED_CXXFLAGS=-O3
# this should not be required. I add it since it looks like with OSX it does not work otherwise
cache:
directories:
- $HOME/.ccache
# osx serial macports
- os: osx
if: branch =~ ^test- OR type IN(pull_request)
osx_image: xcode7.3
env: PLUMED_MACPORTS="plumed" PLUMED_PYTHON="2.7 3.6 3.7"
cache:
directories:
- $HOME/.macports-ci-ccache
# osx serial macports debug variant
- os: osx
if: branch =~ ^test- OR type IN(pull_request)
osx_image: xcode7.3
env: PLUMED_MACPORTS="plumed +allmodules" PLUMED_PYTHON="2.7 3.6 3.7"
cache:
directories:
- $HOME/.macports-ci-ccache
# osx serial macports debug variant
- os: osx
osx_image: xcode8.3
env: PLUMED_MACPORTS="plumed +allmodules" PLUMED_PYTHON="2.7 3.6 3.7"
cache:
directories:
- $HOME/.macports-ci-ccache
# I don't put any mpi variant with macports since it takes too long to compile
## This command can be used to allow failures:
allow_failures:
# I allow this to fail temporarily
- env: PLUMED_DOCKER=yes
# this is failing due to problems in installing MPI, should be allowed to fail until we fix it.
- env: PLUMED_CC=mpicc PLUMED_CXX=mpic++ PLUMED_CXXFLAGS=-O3
## Possible additional variables:
# VALGRIND=yes to make valgrind tests, only when log contains string [valgrind]
install:
# setup environment to allow install on the home directory
- export PATH="$HOME/opt/bin:$PATH"
- export CPATH="$HOME/opt/include:$HOME/opt/arrayfire/include:$CPATH"
- export INCLUDE="$HOME/opt/include:$HOME/opt/arrayfire/include:$INCLUDE"
- export LIBRARY_PATH="$HOME/opt/lib:$HOME/opt/arrayfire/lib:$LIBRARY_PATH"
- export LD_LIBRARY_PATH="$HOME/opt/lib:$HOME/opt/arrayfire/lib:$LD_LIBRARY_PATH"
- export PYTHONPATH="$HOME/opt/lib/plumed/python:$PYTHONPATH"
# Setting the TMPDIR in this way allegedly prevents problems with the compilation of
# PLUMED + Python on macos
- export TMPDIR="/tmp"
# on travis, better dump stack trace in case there is an error
- export PLUMED_STACK_TRACE=yes
- export PLUMED_NUM_THREADS=2
- ./.travis/check.log valgrind || VALGRIND=no
# update packages
- if [[ "$TRAVIS_OS_NAME" == "osx" ]] && test -z "$PLUMED_MACPORTS" ; then
brew update > /dev/null ;
brew install ccache ;
export PLUMED_MPIRUN="mpirun --oversubscribe" ;
fi
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get update -qq ; fi
# install some package - these are fast, we install them anyway
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get install -y libfftw3-dev gsl-bin libgsl0-dev libboost-serialization-dev ; fi
- if test "$PLUMED_CXX" ; then ./.travis/install.xdrfile ; fi
# a specific old version of asmjit is required:
- if test -n "$ASMJIT" ; then ./.travis/install.asmjit $ASMJIT ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
./.travis/install.ccache v3.5 ;
fi
# cppcheck:
# I use 1.71 since 1.72 seems to report a lot of false positive
- if test "$CPPCHECK" == yes ; then ./.travis/install.cppcheck $CPPCHECK_VERSION ; fi
# for plumedcheck I need latest gawk
- if test "$CPPCHECK" == yes ; then ./.travis/install.gawk 4.2.1 ; fi
# for plumedcheck I need astyle
- if test "$CPPCHECK" == yes ; then make -j 4 -C astyle ; fi
# installation of these packages takes a lot of time
# we do it only when needed
- if test "$PLUMED_CXX" == "mpic++" -a "$TRAVIS_OS_NAME" == "linux" ; then sudo apt-get install -y libopenmpi-dev openmpi-bin ; fi
- if test "$PLUMED_CXX" == "mpic++" -a "$TRAVIS_OS_NAME" == "osx" ; then brew install openmpi ; fi
- if test "$MAKEDOC" == yes ; then sudo apt-get install -y graphviz ; fi
# install doxygen-latex
- if test "$MAKEDOC" == yes ; then sudo apt-get install -y doxygen-latex ; fi
# install aspell
- if test "$MAKEDOC" == yes ; then sudo apt-get install -y aspell aspell-en ; fi
# install lcov
- if test "$MAKECOVERAGE" == yes ; then ./.travis/install.lcov v1.13 ; fi
# install numpy and cython for python interface
# only for linux and homebrew (no macports)
- if test "$PLUMED_CXX" ; then
sudo pip install --upgrade pip ;
sudo pip install numpy ;
sudo pip install Cython ;
sudo pip install nose ;
fi
# then replace doxygen with the desided version
# I use 1.8.10 instead of 1.8.11 since it looks like 1.8.11 have troubles with
# non case sensitive files (it writes capitalized filenames)
- if test "$MAKEDOC" == yes ; then ./.travis/install.doxygen Release_1_8_14 ; fi
- if test "$VALGRIND" == yes ; then sudo apt-get install -y valgrind ; fi
- if test "$LAPACK" == yes ; then sudo apt-get -y install libatlas-base-dev ; fi
# moreover, we hardcode path to dynamic library, required for xdrfile to link properly
# I do it only when LD_LIBRARY_PATH is non blank, since otherwise clang gives problems
- if test -n "$LD_LIBRARY_PATH" ; then PLUMED_LDFLAGS="-Wl,-rpath,$LD_LIBRARY_PATH" ; fi
# arrayfire
- if test "$ARRAYFIRE" == yes; then ./.travis/install.arrayfire ; fi
# macports related stuff
# configure macports
- if test -n "$PLUMED_MACPORTS" ; then
export COLUMNS=80 ;
wget https://raw.githubusercontent.com/GiovanniBussi/macports-ci/master/macports-ci ;
chmod +x ./macports-ci ;
./macports-ci install ;
PATH="/opt/local/bin:$PATH" ;
make macports ;
./macports-ci localports macports ;
./macports-ci ccache ;
fi
script:
# make sure all modules are enabled
- CONFIG_FLAGS="$CONFIG_FLAGS --enable-modules=all"
# disable tracking dependencies, to build faster
- CONFIG_FLAGS="$CONFIG_FLAGS --disable-dependency-tracking"
# we enable fftw, which is off by default
- CONFIG_FLAGS="$CONFIG_FLAGS --enable-fftw"
# enable boost_serialization to test drr module
- CONFIG_FLAGS="$CONFIG_FLAGS --enable-boost_serialization"
# enable asmjit used in lepton
- if test -n "$ASMJIT" ; then CONFIG_FLAGS="$CONFIG_FLAGS --enable-asmjit" ; fi
- if test "$MAKEDOC" == yes ; then CONFIG_FLAGS="$CONFIG_FLAGS --enable-pdfdoc" ; fi
- if test "$MAKECOVERAGE" == yes ; then CONFIG_FLAGS="$CONFIG_FLAGS --enable-gcov" ; fi
- if test "$ARRAYFIRE" == yes; then CONFIG_FLAGS="$CONFIG_FLAGS --enable-af_cpu"; fi
# when running lcov plumed use moderate optimization
- if test "$MAKECOVERAGE" == yes ; then PLUMED_CXXFLAGS=-O ; fi
# BUILD:
# this is done only if PLUMED_CXX is defined
- if test "$PLUMED_CXX" ; then
ccache -s ;
./configure CXX="ccache $(which $PLUMED_CXX)" CC=$(which $PLUMED_CC) CXXFLAGS="$PLUMED_CXXFLAGS" LDFLAGS="$PLUMED_LDFLAGS" CPPFLAGS="$PLUMED_CPPFLAGS" $CONFIG_FLAGS --prefix="$HOME/opt" ;
make -j 4 ;
make install ;
ccache -s ;
fi
# build using macports
- if test -n "$PLUMED_MACPORTS" ; then
travis_wait sudo port -N -k install $PLUMED_MACPORTS ;
plumed config show ;
./macports-ci ccache --save ;
for p in $PLUMED_PYTHON ; do
travis_wait sudo port -N install py${p//./}-plumed ;
done
fi
# build docker container
- if test "$PLUMED_DOCKER" = yes ; then make -C docker ; fi
# TEST:
- if test "$VALGRIND" == yes ; then OPT=valgrind ; else OPT="" ; fi
# --no-print-directory make it more silent
- if test "$PLUMED_CXX" ; then make --no-print-directory -C regtest $OPT ; fi
# test with gcc6
- if test "$PLUMED_DOCKER" = yes ; then docker run -v "$PWD/regtest":/home/plumed/regtest -it plumed /bin/bash -c "make -C regtest" ; fi
# currently, gcc6 fails for numerical reasons. Once this is fixed we can add the "make -C regtest checkfail" command below
- if test "$MAKEDOC" == yes ; then make -C regtest copytodoc ; fi
- if test "$MAKECOVERAGE" == yes ; then make -C developer-doc coverage ; fi
- if test "$MAKEDOC" == yes ; then make doc >/dev/null ; fi
- if test "$PLUMED_CXX" ; then make -C regtest checkfail ; fi
# OpenBLAS is needed for numpy, I install it separately since it takes a long time
- if test -n "$PLUMED_MACPORTS" ; then
travis_wait sudo port -N -d test $PLUMED_MACPORTS ;
travis_wait sudo port -N install OpenBLAS ;
for p in $PLUMED_PYTHON ; do
travis_wait sudo port test py${p//./}-plumed ;
done
fi
- if test "$PLUMED_CXX" ; then
nosetests -v -w python ;
fi
# CPPCHECK:
# this is required so as to have all the include files inplace:
# notice that this is done automatically in build
- if test "$CPPCHECK" == yes ; then make -C src/lib/ dirslinks ; fi
# then we do cppcheck
# notice that with make codecheck we also run the maketools/plumedcheck
# script which check if coding policies are satisfied
- if test "$CPPCHECK" == yes ; then make codecheck ; fi
after_success:
- if test "$MAKEDOC" == yes ; then ./.travis/push doc ; fi
- if test "$MAKECOVERAGE" == yes ; then ./.travis/push coverage ; fi
- if test "$MAKECOVERAGE" == yes ; then bash <(curl -s https://codecov.io/bash) > /dev/null ; fi