593 lines (510 loc) · 17.2 KB
/
package.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
name: packaging
on:
push:
branch-ignore:
- '*'
tags:
- 'v*'
- 'dev*'
- '*-*-*'
- '*.*.*'
- 'pack*'
env:
PV_TAG: v5.12.0
PV_REPO: topology-tool-kit/ttk-paraview
jobs:
# -------------#
# Build Ubuntu #
# -------------#
build-linux:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-20.04, ubuntu-22.04]
steps:
- uses: actions/checkout@v3
name: Checkout TTK source code
- name: Install Ubuntu dependencies
run: |
sudo apt update
# TTK dependencies
sudo apt install -y \
libboost-system-dev \
libeigen3-dev \
libgraphviz-dev \
libsqlite3-dev \
libgl1-mesa-dev \
libwebsocketpp-dev \
graphviz \
python3-sklearn \
zlib1g-dev \
libqhull-dev \
dpkg-dev
- name: Install optional dependencies
uses: ./.github/actions/install-deps-unix
- name: Fetch TTK-ParaView headless Debian package
run: |
wget -O ttk-paraview.deb \
https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-${{ env.PV_TAG }}-${{ matrix.os }}.deb
- name: Install ParaView .deb
run: |
sudo apt install ./ttk-paraview.deb
- name: Create & configure TTK build directory
run: |
mkdir build
cd build
cmake \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX=/usr \
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \
-DTTK_BUILD_VTK_WRAPPERS=TRUE \
-DTTK_BUILD_STANDALONE_APPS=TRUE \
-DTTK_ENABLE_KAMIKAZE=TRUE \
-DTTK_ENABLE_DOUBLE_TEMPLATING=FALSE \
-DTTK_ENABLE_CPU_OPTIMIZATION=FALSE \
-DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE \
$GITHUB_WORKSPACE
- name: Build TTK
run: |
cd build
# not enough RAM to build in parallel (or with ninja)
cmake --build .
- name: Package TTK & update package information
run: |
cd build
cpack -G DEB
- name: Upload TTK .deb package
uses: actions/upload-artifact@v3
with:
name: ttk-${{ matrix.os }}.deb
path: build/ttk.deb
# ------------#
# Test Ubuntu #
# ------------#
test-linux:
needs: build-linux
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-20.04, ubuntu-22.04]
steps:
- uses: actions/checkout@v3
name: Checkout TTK source code
- name: Fetch TTK-ParaView headless Debian package
run: |
wget -O ttk-paraview.deb \
https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-${{ env.PV_TAG }}-${{ matrix.os }}.deb
- name: Fetch TTK .deb artifact
uses: actions/download-artifact@v3
with:
name: ttk-${{ matrix.os }}.deb
- name: Install generated .deb packages
run: |
sudo apt update
sudo apt install ./ttk-paraview.deb
sudo apt install ./ttk.deb
- name: Set PYTHONPATH for Ubuntu 22.04 pvpython
if: matrix.os == 'ubuntu-22.04'
run: |
# pvpython does not embed the correct PYTHONPATH
echo "PYTHONPATH=/usr/lib/python3/dist-packages:$PYTHONPATH" >> $GITHUB_ENV
- name: Run TTK tests
uses: ./.github/actions/test-ttk-unix
- uses: actions/checkout@v3
with:
repository: "topology-tool-kit/ttk-data"
ref: "dev"
path: "ttk-data"
name: Checkout ttk-data
- name: Resample large datasets
shell: python3 {0}
working-directory: ./ttk-data
run: |
from paraview import simple
for ds in ["ctBones.vti"]:
vti = simple.XMLImageDataReader(FileName=ds)
rsi = simple.ResampleToImage(Input=vti)
rsi.SamplingDimensions = [128, 128, 128]
simple.SaveData(ds, rsi)
- name: Run ttk-data Python scripts
run: |
cd ttk-data
# no X server
rm python/geometryApproximation.py
python3 -u python/run.py
- name: Test ttk-data Python scripts results [NOT ENFORCED]
continue-on-error: true
run: |
cd ttk-data
cat python/res.json
diff python/hashes/${{ matrix.os }}.json python/res.json
# ------------#
# Build macOS #
# ------------#
build-macos:
runs-on: macos-12
steps:
- uses: actions/checkout@v3
name: Checkout TTK source code
- name: Remove hosted Python
run: |
sudo rm -rf /Library/Frameworks/Python.framework/
sudo rm -rf /usr/local/Frameworks/Python.framework/
- name: Install macOS dependencies
run: |
# ParaView dependencies
brew reinstall python
brew install --cask xquartz
brew install wget llvm libomp mesa glew qt@5 ninja
# TTK dependencies
brew install boost eigen graphviz numpy websocketpp
- name: Install optional dependencies
uses: ./.github/actions/install-deps-unix
- name: Fetch & install TTK-ParaView
run: |
wget https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-${{ env.PV_TAG }}.tar.gz
tar xzf ttk-paraview-${{ env.PV_TAG }}.tar.gz
sudo cp -r ttk-paraview/* /usr/local
pvpython -m pip install scikit-learn
- name: Set compilers as environment variables
run: |
echo "CC=$(brew --prefix llvm)/bin/clang" >> $GITHUB_ENV
echo "CXX=$(brew --prefix llvm)/bin/clang++" >> $GITHUB_ENV
- name: Create & configure TTK build directory
run: |
mkdir build
cd build
cmake \
-DCMAKE_BUILD_TYPE=Release \
-DQt5_DIR=$(brew --prefix qt@5)/lib/cmake/Qt5 \
-DPython3_FIND_STRATEGY=LOCATION \
-DPython3_ROOT_DIR=$(brew --prefix python) \
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \
-DTTK_BUILD_VTK_WRAPPERS=TRUE \
-DTTK_BUILD_STANDALONE_APPS=TRUE \
-DTTK_ENABLE_KAMIKAZE=TRUE \
-DTTK_ENABLE_DOUBLE_TEMPLATING=TRUE \
-DTTK_ENABLE_CPU_OPTIMIZATION=FALSE \
-DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE \
-GNinja \
$GITHUB_WORKSPACE
- name: Build TTK
run: |
cd build
cmake --build . --parallel
- name: Package TTK
run: |
cd build
cpack -G TGZ
- name: Upload compressed binaries
uses: actions/upload-artifact@v3
with:
name: ttk.tar.gz
path: build/ttk.tar.gz
# -----------#
# Test macOS #
# -----------#
test-macos:
needs: build-macos
runs-on: macos-12
steps:
- uses: actions/checkout@v3
name: Checkout TTK source code
- name: Remove hosted Python
run: |
sudo rm -rf /Library/Frameworks/Python.framework
sudo rm -rf /usr/local/Frameworks/Python.framework
- name: Install macOS dependencies
run: |
# ParaView dependencies
brew reinstall python
brew install --cask xquartz
brew install wget llvm libomp mesa glew qt@5 ninja
# TTK dependencies
brew install boost eigen graphviz numpy websocketpp
- name: Fetch TTK-ParaView
run: |
wget https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-${{ env.PV_TAG }}.tar.gz
- name: Fetch TTK .tar.gz artifact
uses: actions/download-artifact@v3
with:
name: ttk.tar.gz
- name: Install binary archives packages
run: |
tar xzf ttk-paraview-${{ env.PV_TAG}}.tar.gz
sudo cp -r ttk-paraview/* /usr/local
tar xzf ttk.tar.gz
sudo cp -r ttk/* /usr/local
pvpython -m pip install --break-system-packages scikit-learn
- name: Set environment variables
run: |
echo "CC=$(brew --prefix llvm)/bin/clang" >> $GITHUB_ENV
echo "CXX=$(brew --prefix llvm)/bin/clang++" >> $GITHUB_ENV
echo "CMAKE_PREFIX_PATH=$(brew --prefix qt@5)/lib/cmake:$CMAKE_PREFIX_PATH" >> $GITHUB_ENV
# pvpython does not embed the correct PYTHONPATH
echo "PYTHONPATH=/usr/local/lib/python3.12/site-packages:$PYTHONPATH" >> $GITHUB_ENV
- name: Run TTK tests
uses: ./.github/actions/test-ttk-unix
- uses: actions/checkout@v3
with:
repository: "topology-tool-kit/ttk-data"
ref: "dev"
path: "ttk-data"
name: Checkout ttk-data
- name: Run ttk-data Python scripts
run: |
cd ttk-data
pvpython -u python/run.py
env:
PV_PLUGIN_PATH: /usr/local/bin/plugins/TopologyToolKit
- name: Test ttk-data Python scripts results [NOT ENFORCED]
continue-on-error: true
run: |
cd ttk-data
cat python/res.json
diff python/hashes/macOS.json python/res.json
# --------------#
# Build Windows #
# --------------#
build-windows:
runs-on: windows-2022
env:
CONDA_ROOT: C:\Miniconda
steps:
- uses: actions/checkout@v3
name: Checkout TTK source code
- uses: s-weigand/setup-conda@v1
- name: Install dependencies with conda
shell: bash
run: |
conda install -c conda-forge "qt>=5.12" boost eigen spectralib zfp \
scikit-learn openmp graphviz websocketpp
- name: Remove hosted Python
shell: bash
run: |
rm -rf C:/hostedtoolcache/windows/Python
- name: Fetch TTK-ParaView installer
run: |
curl.exe -OL https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-${{ env.PV_TAG }}.exe
- name: Install ParaView
shell: cmd
run: |
ttk-paraview-${{ env.PV_TAG }}.exe /S
- name: Fetch Visual C++ redistribuable run-time
run: |
curl.exe -OL https://aka.ms/vs/16/release/vc_redist.x64.exe
- name: Create & configure TTK build directory
shell: cmd
run: |
set CMAKE_PREFIX_PATH=%CONDA_ROOT%\Library\lib\cmake;%CONDA_ROOT%\Library\share\eigen3\cmake;%CONDA_ROOT%\Library\cmake;%ProgramFiles%\TTK-ParaView\lib\cmake
mkdir build
cd build
cmake ^
-DCMAKE_POLICY_DEFAULT_CMP0092=NEW ^
-DBUILD_SHARED_LIBS:BOOL=TRUE ^
-DCMAKE_INSTALL_PREFIX="%ProgramFiles%\TTK" ^
-DPython3_ROOT_DIR="%CONDA_ROOT%" ^
-DGraphviz_INCLUDE_DIR="%CONDA_ROOT%\Library\include\graphviz" ^
-DGraphviz_CDT_LIBRARY="%CONDA_ROOT%\Library\lib\cdt.lib" ^
-DGraphviz_GVC_LIBRARY="%CONDA_ROOT%\Library\lib\gvc.lib" ^
-DGraphviz_CGRAPH_LIBRARY="%CONDA_ROOT%\Library\lib\cgraph.lib" ^
-DGraphviz_PATHPLAN_LIBRARY="%CONDA_ROOT%\Library\lib\pathplan.lib" ^
-DTTK_BUILD_PARAVIEW_PLUGINS=TRUE ^
-DTTK_BUILD_VTK_WRAPPERS=TRUE ^
-DTTK_BUILD_STANDALONE_APPS=TRUE ^
-DTTK_ENABLE_KAMIKAZE=TRUE ^
-DTTK_ENABLE_DOUBLE_TEMPLATING=FALSE ^
-DTTK_ENABLE_OPENMP=TRUE ^
-DTTK_ENABLE_CPU_OPTIMIZATION=FALSE ^
-DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE ^
-G"Visual Studio 17 2022" ^
-Tclangcl ^
..
- name: Build TTK
shell: bash
run: |
cd build
cmake --build . --config Release --parallel
- name: Package TTK
shell: bash
run: |
cd build
cpack -C Release -G NSIS64
- name: Upload TTK .exe package
uses: actions/upload-artifact@v3
with:
name: ttk.exe
path: build/ttk.exe
# -------------#
# Test Windows #
# -------------#
test-windows:
needs: build-windows
runs-on: windows-2022
env:
PV_DIR: C:\Program Files\TTK-ParaView
TTK_DIR: C:\Program Files\TTK
CONDA_ROOT: C:\Miniconda
steps:
- uses: actions/checkout@v3
name: Checkout TTK source code
- uses: s-weigand/setup-conda@v1
- name: Install dependencies with conda
shell: bash
run: |
conda install -c conda-forge "qt>=5.12" boost eigen spectralib zfp \
scikit-learn openmp graphviz websocketpp
- name: Remove hosted Python
shell: bash
run: |
rm -rf C:/hostedtoolcache/windows/Python
- name: Fetch TTK-ParaView installer
run: |
curl.exe -OL https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-${{ env.PV_TAG }}.exe
- name: Fetch TTK .exe artifact
uses: actions/download-artifact@v3
with:
name: ttk.exe
- name: Install TTK-ParaView and TTK
shell: cmd
run: |
ttk-paraview-${{ env.PV_TAG }}.exe /S
ttk.exe /S
- name: Set PATH environment variable
shell: bash
run: |
echo "$PV_DIR/bin" >> $GITHUB_PATH
echo "$TTK_DIR/bin" >> $GITHUB_PATH
- name: Test C++ example
shell: cmd
run: |
set CMAKE_PREFIX_PATH=%TTK_DIR%\lib\cmake;%PV_DIR%\lib\cmake
cd %GITHUB_WORKSPACE%\examples\c++
mkdir build
cd build
cmake -G"Visual Studio 17 2022" -Tclangcl ..
cmake --build . --config Release --parallel
Release\ttkExample-c++.exe -i ..\..\data\inputData.off
- name: Test VTK-C++ example
shell: cmd
run: |
set CMAKE_PREFIX_PATH=%TTK_DIR%\lib\cmake;%PV_DIR%\lib\cmake
cd %GITHUB_WORKSPACE%\examples\vtk-c++
mkdir build
cd build
cmake -G"Visual Studio 17 2022" -Tclangcl ..
cmake --build . --config Release --parallel
Release\ttkExample-vtk-c++.exe -i ..\..\data\inputData.vtu
- name: Test Python example [TEMPORARILY NOT ENFORCED]
continue-on-error: true
shell: cmd
run: |
set PYTHONPATH=%PV_DIR%\bin\Lib\site-packages;%TTK_DIR%\bin\Lib\site-packages;%CONDA_ROOT%\Lib
cd %GITHUB_WORKSPACE%\examples\python
python example.py ..\data\inputData.vtu
- name: Test pvpython example
shell: cmd
run: |
set PYTHONPATH=%CONDA_ROOT%\Lib
set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins
cd %GITHUB_WORKSPACE%\examples\pvpython
pvpython.exe example.py ..\data\inputData.vtu
- name: Test standalone
shell: cmd
run: |
cd %GITHUB_WORKSPACE%\examples\vtk-c++
ttkHelloWorldCmd.exe -i %GITHUB_WORKSPACE%\examples\data\inputData.vtu
- uses: actions/checkout@v3
with:
repository: "topology-tool-kit/ttk-data"
ref: "dev"
path: "ttk-data"
name: Checkout ttk-data
- name: Resample large datasets
shell: cmd
run: |
set PYTHONPATH=%CONDA_ROOT%\Lib
set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins
cd ttk-data
pvpython.exe python\resample.py ctBones.vti 128 128 128 ctBones.vti
- name: Run ttk-data Python scripts
shell: cmd
run: |
set PYTHONPATH=%PV_DIR%\bin\Lib\site-packages;%TTK_DIR%\bin\Lib\site-packages;%CONDA_ROOT%\Lib;%CONDA_ROOT%\DLLs
set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins
cd ttk-data
pvpython.exe -u python\run.py
- name: Test ttk-data Python scripts results [NOT ENFORCED]
continue-on-error: true
shell: cmd
run: |
cd ttk-data
type python\res.json
FC python\hashes\windows.json python\res.json
# ---------------#
# Create release #
# ---------------#
create-release:
runs-on: ubuntu-latest
needs: [test-linux, test-macos, test-windows]
steps:
- name: Delete previous release
uses: actions/github-script@v6
continue-on-error: true
with:
script: |
const { owner, repo } = context.repo
const { data: { id } } = await github.rest.repos.getReleaseByTag({
owner,
repo,
tag: "${{ github.ref_name }}"
})
await github.rest.repos.deleteRelease({ owner, repo, release_id: id })
- name: Create Release
uses: actions/github-script@v6
with:
script: |
const { owner, repo } = context.repo
await github.rest.repos.createRelease({
owner,
repo,
tag_name: "${{ github.ref_name }}",
name: "Release ${{ github.ref_name }}",
draft: false,
prerelease: true
})
- name: Fetch all uploaded artifacts
uses: actions/download-artifact@v3
- name: Upload Ubuntu Focal .deb as Release Asset
uses: svenstaro/upload-release-action@v2
with:
repo_token: ${{ secrets.GITHUB_TOKEN }}
tag: ${{ github.ref }}
file: ttk-ubuntu-20.04.deb/ttk.deb
asset_name: ttk-$tag-ubuntu-20.04.deb
- name: Upload Ubuntu Jammy .deb as Release Asset
uses: svenstaro/upload-release-action@v2
with:
repo_token: ${{ secrets.GITHUB_TOKEN }}
tag: ${{ github.ref }}
file: ttk-ubuntu-22.04.deb/ttk.deb
asset_name: ttk-$tag-ubuntu-22.04.deb
- name: Upload macOS binary archives as Release Asset
uses: svenstaro/upload-release-action@v2
with:
repo_token: ${{ secrets.GITHUB_TOKEN }}
tag: ${{ github.ref }}
file: ttk.tar.gz/ttk.tar.gz
asset_name: ttk-$tag.tar.gz
- name: Upload Windows .exe as Release Asset
uses: svenstaro/upload-release-action@v2
with:
repo_token: ${{ secrets.GITHUB_TOKEN }}
tag: ${{ github.ref }}
file: ttk.exe/ttk.exe
asset_name: ttk-$tag.exe
- name: Delete package artifacts
uses: geekyeggo/delete-artifact@v2
with:
name: |
ttk*