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This issue is to report a missing CURIE. Specifically, ICEES KG calls Name Resolver to map CURIEs to ICEES feature variable, using search_term and limit parameters. For diseases, we have been using search terms structured as 'disease X diagnosis'. This approach was tested extensively and has been yielding more accurate mappings with less noise. However, in our latest ICEES KG instance, 'asthma diagnosis' was not correctly mapped to MONDO:0004979, which was not the case previously, at least I don't think so, given that I've successfully used that CURIE in numerous queries. I tested several other "search terms" using Name Resolver and these return the expected CURIES (see example below). So, I believe the issue is specific to "asthma diagnosis" and MONDO:0004979.
Example returns for "idiopathic bronchiectasis diagnosis":
This looks like it is working well on both the RENCI NameRes instances (Dev and Exp). @karafecho could you please confirm, and close this issue if it appears to be fixed? If not, let me know and I'll investigate it further!
This issue is to report a missing CURIE. Specifically, ICEES KG calls Name Resolver to map CURIEs to ICEES feature variable, using
search_term
andlimit
parameters. For diseases, we have been using search terms structured as 'disease X diagnosis'. This approach was tested extensively and has been yielding more accurate mappings with less noise. However, in our latest ICEES KG instance, 'asthma diagnosis' was not correctly mapped to MONDO:0004979, which was not the case previously, at least I don't think so, given that I've successfully used that CURIE in numerous queries. I tested several other "search terms" using Name Resolver and these return the expected CURIES (see example below). So, I believe the issue is specific to "asthma diagnosis" and MONDO:0004979.Example returns for "idiopathic bronchiectasis diagnosis":
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