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Split Protein.txt and SmallMolecule.txt to avoid crashing Solr #67

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gaurav opened this issue Jun 29, 2023 · 2 comments
Closed

Split Protein.txt and SmallMolecule.txt to avoid crashing Solr #67

gaurav opened this issue Jun 29, 2023 · 2 comments
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good first issue Good for newcomers
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Name Resolver v2....

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gaurav commented Jun 29, 2023

It's unclear how large a file Solr can ingest without problems (the 20G Gene.txt file appears to work), but the 100+GB Protein.txt file definitely doesn't. We should split it into smaller files for the ingest. The best place to do this is to include it in the Makefile.
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gaurav commented Jun 29, 2023

This can be done with split using some variant of split -d -l 10000000 Protein.txt Protein.txt.. Remember to delete the original Protein.txt once you're done to save on disk space.

@gaurav gaurav added the good first issue Good for newcomers label Jun 29, 2023
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gaurav commented Sep 27, 2023

This has now been implemented. Closing.

@gaurav gaurav closed this as completed Sep 27, 2023
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