[community:r] Error when travis install BiocManager for Linux / R - release

[jalazawa]

I get this error on Travis.

Installing Bioconductor
3.55s$ Rscript -e 'if (!requireNamespace(\"BiocManager\", quietly=TRUE))  install.packages("BiocManager");if (TRUE) BiocManager::install(version = "devel");cat(append = TRUE, file = "~/.Rprofile.site", "options(repos = BiocManager::repositories());")'
Error: unexpected input in "if (!requireNamespace(\"
Execution halted
The command "eval Rscript -e 'if (!requireNamespace(\"BiocManager\", quietly=TRUE))  install.packages("BiocManager");if (TRUE) BiocManager::install(version = "devel");cat(append = TRUE, file = "~/.Rprofile.site", "options(repos = BiocManager::repositories());")' " failed. Retrying, 2 of 3.
Error: unexpected input in "if (!requireNamespace(\"
Execution halted

The Travis log job is here.

My Travis file :

language: R
sudo: true
cache: packages

bioc_required: true
bioc_use_devel: true

os:
 - linux

r:
 - bioc-devel
 - bioc-release

r_packages:
  - covr
  - devtools

bioc_packages:
  - rhdf5
  - zlibbioc

after_success:
  - Rscript -e 'library(covr); codecov()'

env:
  global:
  - _R_CHECK_FORCE_SUGGESTS_=FALSE

/cc @jimhester and @jeroen

[close-issue-app]

We're moving our community interactions away from GitHub issues. Please direct any new posts to the Travis CI Community Forum. We'll be glad to take a look there. This issue will be automatically closed. Thanks!