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soarlogF_DataQuality.py
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soarlogF_DataQuality.py
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# -*- coding: utf-8 -*-
"""
Created on Thu May 10 10:39:00 2012
@author: tiago
"""
from PyQt4 import QtCore,QtGui,uic,QtSql
from soarlogF_TableModel import *
import sqlalchemy
import frame_infos
import os,shutil
import numpy as np
import Queue,threading,logging
import time
import bz2
uipath = os.path.dirname(__file__)
class DataQuality():
#dqStatus = ['','OK','WARN','FAIL']
_separator = '\n+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+\n'
################################################################################################
#
#
# def __init__(self):
# self.dqStatus = ['','OK','WARN','FAIL']
#
#
################################################################################################
################################################################################################
#
#
def startDataQuality(self):
session_CID = self.Session()
self.dataQuality_ui = DataQualityUI()
#
# Add projects encountered in database
#
projInfo = self.getProjects()
prj = np.append([''],projInfo[0])#np.append(projInfo[0],['all','Calibration'])
dataset = '{date}-{PID}'
for i in range(len(prj)):
if i == 0 or len(prj[i]) == 3:
self.dataQuality_ui.comboBox.addItem(prj[i])
#
# For each project, test if dataquality has already began. If not, setup automatic file indentification
# and other miscelaneous
#
if len(prj[i]) == 3:
query = session_CID.query(self.Obj_FLDQ).filter(self.Obj_FLDQ.DATASET == dataset.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(prj[i])))[:]
query_tvdb = session_CID.query(self.Obj_CID).filter(self.Obj_CID.FILENAME.like('%-'+prj[i]+'%' ) ).filter(sqlalchemy.not_(self.Obj_CID.INSTRUME.like('%NOTE%')))[:]
if len(query) < len(query_tvdb):
#
# There are more files in the database than those in program list! Including project files in database
#
#query = session_CID.query(self.Obj_CID).filter(self.Obj_CID.FILENAME.like('%-'+prj[i]+'%' ) ).filter(sqlalchemy.not_(self.Obj_CID.INSTRUME.like('%NOTE%')))[:]
for ii in range(len(query_tvdb)):
query_fldq = session_CID.query(self.Obj_FLDQ).filter(self.Obj_FLDQ.id_tvDB == query_tvdb[ii].id)[:]
if len(query_fldq) == 0:
iquery = qInst = session_CID.query(self.Obj_INSTRUMENTS[query_tvdb[ii].INSTRUME].id).filter(self.Obj_INSTRUMENTS[query_tvdb[ii].INSTRUME].FILENAME.like('%'+query_tvdb[ii].FILENAME))[:]
entry = self.Obj_FLDQ(id_tvDB=query_tvdb[ii].id,
id_INSTRUME=iquery[0].id,
PID=self.semester_ID.format(prj[i]),
TYPE=query_tvdb[ii].IMAGETYP,
SUBTYPE='night-obs',
FILENAME=query_tvdb[ii].FILENAME,
PATH=query_tvdb[ii].PATH,
DATASET=dataset.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(prj[i])))
session_CID.add(entry)
session_CID.commit()
#.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())))
self.connect(self.dataQuality_ui.buttonBox, QtCore.SIGNAL('clicked(QAbstractButton*)'), self.commitDataQuality)
self.connect(self.dataQuality_ui.validTime, QtCore.SIGNAL('timeChanged(QTime)'),
self.dataQuality_ui.obsTime.setMinimumTime)
self.connect(self.dataQuality_ui.obsTime, QtCore.SIGNAL('timeChanged(QTime)'),
self.dataQuality_ui.validTime.setMaximumTime)
self.connect(self.dataQuality_ui.comboBox, QtCore.SIGNAL('currentIndexChanged(int)'), self.readDQProject)
self.connect(self.dataQuality_ui.comboBox_Object, QtCore.SIGNAL('currentIndexChanged(int)'), self.readDQObject)
self.connect(self.dataQuality_ui.comboBox_config, QtCore.SIGNAL('currentIndexChanged(int)'), self.readCDQ)
self.connect(self.dataQuality_ui.tabWidget, QtCore.SIGNAL('currentChanged(int)'),self.setDqMessage)
self.connect(self.dataQuality_ui.pushButton_slog,QtCore.SIGNAL('clicked()'), self.genSOARLOG)
self.connect(self.dataQuality_ui.pushButton_sRep,QtCore.SIGNAL('clicked()'), self.saveReport)
self.connect(self.dataQuality_ui.pushButton_copy,QtCore.SIGNAL('clicked()'), self.copyProgramFiles)
self.connect(self.dataQuality_ui.pushButton_exclude,QtCore.SIGNAL('clicked()'), self.excludeFilesFromProgram)
self.connect(self.dataQuality_ui.pushButton_filtertable,QtCore.SIGNAL('clicked()'), self.filterMainTable)
self.connect(self.dataQuality_ui.pushButton_RunReplace,QtCore.SIGNAL('clicked()'), self.runUpdateSelectedColumn)
self.connect(self.dataQuality_ui.pushButton_loadfromfile,QtCore.SIGNAL('clicked()'), self.loadUpdateSelectedColumnFromFile)
self.connect(self.dataQuality_ui.pushButton_save2file,QtCore.SIGNAL('clicked()'), self.saveSelectedColumnToFile)
self.connect(self.dataQuality_ui.comboBiasConf, QtCore.SIGNAL('currentIndexChanged(int)'), self.readBiasConf)
self.connect(self.dataQuality_ui.comboDarkConf, QtCore.SIGNAL('currentIndexChanged(int)'), self.readDarkConf)
self.connect(self.dataQuality_ui.comboFlatConf, QtCore.SIGNAL('currentIndexChanged(int)'), self.readFlatConf)
#self.connect(self.dataQuality_ui.comboBox_FIELD, QtCore.SIGNAL('currentIndexChanged(int)'), self.commitDataQuality)
#self.connect(self.dataQuality_ui.comboBox_6, QtCore.SIGNAL('currentIndexChanged(int)'), self.commitDataQuality)
#
# Never link comboBox_config to commitDataQuality. It will fail since it changes the object before you can
# commit to the database.
#
self.connect(self.dataQuality_ui.lineEdit_5,QtCore.SIGNAL('editingFinished()'), self.commitDataQuality)
self.connect(self.dataQuality_ui.lineEdit_6,QtCore.SIGNAL('editingFinished()'), self.commitDataQuality)
self.connect(self.dataQuality_ui.lineEdit_7,QtCore.SIGNAL('editingFinished()'), self.commitDataQuality)
self.connect(self.dataQuality_ui.lineEdit_8,QtCore.SIGNAL('editingFinished()'), self.commitDataQuality)
self.connect(self,QtCore.SIGNAL('copyProgress(int)'), self.updateCopyProgress)
self.connect(self,QtCore.SIGNAL('copyDone()'), self.enableCopyButton)
self.dataQuality_ui.lineEditSemesterID.setText(self.semester_ID[:-4])
self.dataQuality_ui.lineEditPathToData.setText(self.dataStorage.format(SID=self.semester_ID[:-4],PID=self.semester_ID.format('123')))
#self.setAnimated(True)
self.tpfModel = SOLogTableModel([], ['FILENAME'],self ,commitDB=None)
self.dataQuality_ui.tableProjectFiles.setModel(self.tpfModel)
self.dataQuality_ui.tableProjectFiles.keyPressEvent = self.handleKeyEvent
self.dataQuality_ui.tableProjectFiles.setSelectionMode(self.dataQuality_ui.tableProjectFiles.ExtendedSelection)
font = QtGui.QFont("Courier New", 8)
self.dataQuality_ui.tableProjectFiles.setFont(font)
self.dataQuality_ui.tableProjectFiles.setAlternatingRowColors(True)
hh = self.dataQuality_ui.tableProjectFiles.horizontalHeader()
hh.setStretchLastSection(True)
#model.setRootPath('/')
#dataQuality_ui.dq_ui.columnDQ.setModel(model)
#dataQuality_ui.dq_ui.columnDQ.setDragDropMode(QtGui.QAbstractItemView.DragDrop)
#label = QtGui.QLabel('HELLO')
#dataQuality_ui.dq_ui.columnDQ.setPreviewWidget(label)
selectionMode = self.ui.tableDB.ExtendedSelection
self.ui.tableDB.setSelectionMode(selectionMode)
# self.connect(selectionMode,QtCore.SIGNAL("currentChanged(const QModelIndex &, const QModelIndex &)"),
# self.testclick)
self.connect(self.ui.tableDB,QtCore.SIGNAL('clicked(QModelIndex)'),
self.updateSelectedColumn)
self.dataQuality_ui.show()
self.dataQuality_ui.exec_()
self.ui.tableDB.setSelectionMode(self.ui.tableDB.SingleSelection)
self.disconnect(self.ui.tableDB,QtCore.SIGNAL('clicked(QModelIndex)'),
self.testclick)
#
#
################################################################################################
def testclick(self,a):
# self.commitDataQuality()
logging.debug('ckicked')
################################################################################################
#
#
def setDqMessage(self,tab):
if tab == 1:
self.dataQuality_ui.label.setText('1) Select the calibration files for this\nproject and select type.\n')
elif tab == 0:
self.dataQuality_ui.label.setText('Configure semester and place for files.\n\n')
elif tab == 2:
self.dataQuality_ui.label.setText('2) Select objects and fill Data Quality\n form.\n')
elif tab == 4:
self.dataQuality_ui.label.setText('''Replace information on table database and file header (name).
Do NOT remove '?' when doing 'matched' selection (specially for
filenames) unless you REALLY know what you are doing.
''')
#
#
################################################################################################
################################################################################################
#
#
def commitDataQuality(self):
logging.debug(str(self.dataQuality_ui.comboBox.currentText()))
self.commitCalibrationDataQuality()
session = self.Session()
query = session.query(self.Obj_DQ).filter(self.Obj_DQ.PID == str(self.dataQuality_ui.comboBox.currentText()))[:]
vtime = 0.
otime = 0.
if len(query) == 0:
vtime = self.dataQuality_ui.validTime.time().hour() + self.dataQuality_ui.validTime.time().minute() / 60.
otime = self.dataQuality_ui.obsTime.time().hour() + self.dataQuality_ui.obsTime.time().minute() / 60.
dqinf = { 'TYPE' : '',\
'SEMESTER' : self.semester_ID[:-4],\
'PID' : str(self.dataQuality_ui.comboBox.currentText()),\
'DATASET' : '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))),\
'DQNOTE' : '',\
'BIAS' : '',\
'DARK' : '',\
'FLATFIELD' : '',\
'BIASNOTE' : '' ,\
'DARKNOTE' : '' ,\
'FLATFIELDNOTE' : '' ,\
'FROMDB' : '',\
'OBSTIME' : otime,\
'VALIDTIME' : vtime
}
info = self.Obj_DQ(**dqinf)
session.add(info)
else:
vtime = float( self.dataQuality_ui.validTime.time().hour() + self.dataQuality_ui.validTime.time().minute() / 60. )
otime = float( self.dataQuality_ui.obsTime.time().hour() + self.dataQuality_ui.obsTime.time().minute() / 60. )
query[0].BIAS = '0'
query[0].DARK = '0'
query[0].FLATFIELD = '0'
query[0].BIASNOTE = ''
query[0].DARKNOTE = ''
query[0].FLATFIELDNOTE = ''
query[0].VALIDTIME = vtime
query[0].OBSTIME = otime
session.commit()
query = session.query(self.Obj_FDQ).filter(self.Obj_FDQ.PID == str(self.dataQuality_ui.comboBox.currentText())).filter(self.Obj_FDQ.OBJECT == str(self.dataQuality_ui.comboBox_Object.currentText()))[:]
if len(query) == 0 and len(str(self.dataQuality_ui.comboBox.currentText())) > 0:
fwhm = 0.
try:
fwhm = float( self.dataQuality_ui.lineEdit_7.text() )
except:
logging.debug('Could not convert fhwm to float... got {0}'.format(self.dataQuality_ui.lineEdit_7.text()))
fwhm = 0.
pass
ell = 0.
try:
ell = float( self.dataQuality_ui.lineEdit_8.text() )
except:
logging.debug('Could not convert elipticity to float... got {0}'.format(self.dataQuality_ui.lineEdit_8.text()))
ell = 0.
pass
dqinf = { 'SEMESTER' : self.semester_ID[:-4] ,\
'PID' : str(self.dataQuality_ui.comboBox.currentText()) ,\
'DATASET' : '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))),\
'OBJECT' : str(self.dataQuality_ui.comboBox_Object.currentText()),\
'FIELD' : str( self.dataQuality_ui.comboBox_FIELD.currentIndex() ),\
'FIELDNOTE' : str( self.dataQuality_ui.lineEdit_5.text() ) ,\
#'CONFIG' : str( self.dataQuality_ui.comboBox_6.currentIndex() ) ,\
#'CONFIGNOTE': str( self.dataQuality_ui.lineEdit_6.text() ) ,\
'FWHM' : fwhm ,\
'E' : ell}
info = self.Obj_FDQ(**dqinf)
session.add(info)
else:
fwhm = 0.
try:
fwhm = float( self.dataQuality_ui.lineEdit_7.text() )
except:
logging.debug('Could not convert fhwm to float... got {0}'.format(self.dataQuality_ui.lineEdit_7.text()))
fwhm = 0.
pass
ell = 0.
try:
ell = float( self.dataQuality_ui.lineEdit_8.text() )
except:
logging.debug('Could not convert elipticity to float... got {0}'.format(self.dataQuality_ui.lineEdit_8.text()))
ell = 0.
pass
query[0].FIELD = str( self.dataQuality_ui.comboBox_FIELD.currentIndex() )
query[0].FIELDNOTE = str( self.dataQuality_ui.lineEdit_5.text() )
#query[0].CONFIG = str( self.dataQuality_ui.comboBox_6.currentIndex() )
#query[0].CONFIGNOTE = str( self.dataQuality_ui.lineEdit_6.text() )
query[0].FWHM = fwhm
query[0].E = ell
querycfg = session.query(self.Obj_CDQ).filter(self.Obj_CDQ.OBJECT == str(self.dataQuality_ui.comboBox_Object.currentText())).filter(
self.Obj_CDQ.PID == self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())) ).filter(self.Obj_CDQ.CONFIG == str(self.dataQuality_ui.comboBox_config.currentText()) ) [:]
if len(querycfg) > 0:
querycfg[0].CONFIGNOTE = str( self.dataQuality_ui.lineEdit_6.text() )
querycfg[0].STATUS = str( self.dataQuality_ui.comboBox_6.currentIndex() )
query = session.query(self.Obj_RDB).filter(self.Obj_RDB.DATASET == '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))))[:]
if len(query) == 0:
#
# Nothing on the database. Creating default values
#
query2 = session.query(self.Obj_CID).filter(self.Obj_CID.FILENAME.like('%-{0}%'.format(str(self.dataQuality_ui.comboBox.currentText()))))[:]
instru_list = np.unique([query2[i].INSTRUME for i in range(len(query2))])
instru =''
if len(instru_list) == 1:
instru = instru_list[0]
else:
for i in range(len(instru_list)):
instru = instru+instru_list[i]+'/'
vals = {'PID':self.semester_ID.format( str(self.dataQuality_ui.comboBox.currentText() ) ) ,\
'PI' : 'None' ,\
'INSTRUME' : instru,\
'SETUP':'',\
'TIMESPENT':otime,\
'TIMEVALID':vtime,\
'DATASET':'{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))),\
'REPORT': ''}
entry = self.Obj_RDB(**vals)
session.add(entry)
else:
query[0].PI = str( self.dataQuality_ui.PI.text() )
query[0].INSTRUME = str( self.dataQuality_ui.INSTRUME.text() )
query[0].SETUP = str( self.dataQuality_ui.SETUP.text() )
query[0].TIMESPENT = otime
query[0].TIMEVALID = vtime
query[0].REPORT = str( self.dataQuality_ui.REPORT.toPlainText() )
session.commit()
self.makeReport()
#
#
################################################################################################
################################################################################################
#
#
def readDQProject(self,action):
if not self.dataQuality_ui.tabWidget.isEnabled():
self.dataQuality_ui.tabWidget.setEnabled(True)
self.setUpCalibrationDQ()
self.setUpCienceDQ()
else:
self.setUpCalibrationDQProject()
session_CID = self.Session()
query = session_CID.query(self.Obj_DQ).filter(self.Obj_DQ.PID == str(self.dataQuality_ui.comboBox.currentText()))[:]
if len(query) > 0:
vtime = query[0].VALIDTIME
otime = query[0].OBSTIME
logging.debug('Obs Time: {0}\nValid Time: {1}'.format(otime,vtime))
if otime > 0.:
self.dataQuality_ui.obsTime.setMinimumTime(QtCore.QTime(0.,0.))
self.dataQuality_ui.obsTime.setMaximumTime(QtCore.QTime(23.,0.))
self.dataQuality_ui.obsTime.setTime(QtCore.QTime( int(otime) , int( np.ceil(60.*(otime-np.floor(otime)) ) ) ))
self.dataQuality_ui.validTime.setMinimumTime(QtCore.QTime(0.,0.))
self.dataQuality_ui.validTime.setMaximumTime(QtCore.QTime(23.,0.))
self.dataQuality_ui.validTime.setTime(QtCore.QTime( int(vtime) , int( np.ceil(60.*(vtime-np.floor(vtime)) ) ) ) )
else:
self.dataQuality_ui.obsTime.setMinimumTime(QtCore.QTime(0.,0.))
self.dataQuality_ui.obsTime.setMaximumTime(QtCore.QTime(23.,0.))
self.dataQuality_ui.obsTime.setTime(QtCore.QTime(*self.calcTime(str(self.dataQuality_ui.comboBox.currentText()))))
self.dataQuality_ui.validTime.setMinimumTime(QtCore.QTime(0.,0.))
self.dataQuality_ui.validTime.setMaximumTime(QtCore.QTime(23.,0.))
self.dataQuality_ui.validTime.setTime(QtCore.QTime(*self.calcTime(str(self.dataQuality_ui.comboBox.currentText()))))
else:
self.dataQuality_ui.obsTime.setMinimumTime(QtCore.QTime(0.,0.))
self.dataQuality_ui.obsTime.setMaximumTime(QtCore.QTime(23.,0.))
self.dataQuality_ui.obsTime.setTime(QtCore.QTime(*self.calcTime(str(self.dataQuality_ui.comboBox.currentText()))))
self.dataQuality_ui.validTime.setMinimumTime(QtCore.QTime(0.,0.))
self.dataQuality_ui.validTime.setMaximumTime(QtCore.QTime(23.,0.))
self.dataQuality_ui.validTime.setTime(QtCore.QTime(*self.calcTime(str(self.dataQuality_ui.comboBox.currentText()))))
self.dataQuality_ui.comboBox_Object.clear()
self.dataQuality_ui.comboBox_Object.addItem('')
self.dataQuality_ui.pushButton_filtertable.setEnabled(False)
# self.dataQuality_ui.validTime.setMaximumTime(self.dataQuality_ui.obsTime.time())
# self.dataQuality_ui.obsTime.setMinimumTime(self.dataQuality_ui.validTime.time())
#
# Seting up object list
#
query2 = session_CID.query(self.Obj_CID).filter(self.Obj_CID.FILENAME.like('%-'+str(self.dataQuality_ui.comboBox.currentText())+'%')).filter(sqlalchemy.not_(self.Obj_CID.INSTRUME.like('NOTE')))[:]
obj_list = self.getObjects(query2)
dataset = '{date}-{PID}'
query3 = session_CID.query(self.Obj_FDQ).filter(self.Obj_FDQ.DATASET == dataset.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format( str(self.dataQuality_ui.comboBox.currentText()) )))[:]
for i in range(len(query3)):
if len(query3[i].OBJECT) > 0 and query3[i].OBJECT not in obj_list:
obj_list = np.append(obj_list,query3[i].OBJECT)
for i in range(len(obj_list)):
self.dataQuality_ui.comboBox_Object.addItem(obj_list[i])
#
# For each object check all available configurations
#
query_CDQ = session_CID.query(self.Obj_CDQ).filter(self.Obj_CDQ.OBJECT.like(obj_list[i]+'%'))[:]
obsConf = []
for j in range(len(query_CDQ)):
obsConf.append(query_CDQ[j].CONFIG)
query_CID = session_CID.query(self.Obj_CID).filter(self.Obj_CID.FILENAME.like('%-'+str(self.dataQuality_ui.comboBox.currentText())+'%')).filter(self.Obj_CID.OBJECT.like(obj_list[i]+'%')).filter(sqlalchemy.not_(self.Obj_CID.INSTRUME.like('NOTE')))[:]
frameobsConf,frameobsCount = self.getConf(query_CID)
for j in range(len(frameobsConf)):
if frameobsConf[j] not in obsConf:
obsConf.append(frameobsConf[j])
vals = {'PID':self.semester_ID.format( str(self.dataQuality_ui.comboBox.currentText() ) ) ,\
'DATASET':dataset.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format( str(self.dataQuality_ui.comboBox.currentText()) )) ,\
'NCONF' : frameobsCount[j] ,\
'OBJECT' : obj_list[i] ,\
'CONFIG' : frameobsConf[j],\
'STATUS' : 0 ,\
'CONFIGNOTE' : '' }
entry = self.Obj_CDQ(**vals)
session_CID.add(entry)
#
# Setting up object configuration
#
self.fillProjectFiles()
#
# Setting up data data quality report
#
query = session_CID.query(self.Obj_RDB).filter(self.Obj_RDB.DATASET == '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))))[:]
if len(query) == 0:
#
# Nothing done yet. Creating basic table
#
instru_list = np.unique([query2[i].INSTRUME for i in range(len(query2))])
instru =''
if len(instru_list) == 1:
instru = instru_list[0]
else:
for i in range(len(instru_list)):
instru = instru+instru_list[i]+'/'
#
# Query master DB and look for PI name.
#
sMaster = self.MasterSession()
mquery = sMaster.query(self.Obj_RDB).filter(self.Obj_RDB.PID ==
self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))) [:]
PI = 'None'
if len(mquery) > 0:
PI = mquery[0].PI
vals = {'PID':self.semester_ID.format( str(self.dataQuality_ui.comboBox.currentText() ) ) ,\
'PI' : PI ,\
'INSTRUME' : instru,\
'SETUP':'',\
'TIMESPENT':0.,\
'TIMEVALID':0.,\
'DATASET':'{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))),\
'REPORT': ''}
entry = self.Obj_RDB(**vals)
session_CID.add(entry)
self.dataQuality_ui.PI.setText(vals['PI'])
self.dataQuality_ui.INSTRUME.setText(vals['INSTRUME'])
self.dataQuality_ui.SETUP.setText(vals['SETUP'])
self.dataQuality_ui.REPORT.setText(vals['REPORT'])
else:
#
# Already started reading from DB.
#
self.dataQuality_ui.PI.setText( query[0].PI )
self.dataQuality_ui.INSTRUME.setText(query[0].INSTRUME)
self.dataQuality_ui.SETUP.setText( query[0].SETUP )
self.dataQuality_ui.REPORT.setText( query[0].REPORT )
session_CID.commit()
#
#
################################################################################################
################################################################################################
#
#
def fillProjectFiles(self):
session_CID = self.Session()
#
# Setting up data quality files
#
query = session_CID.query(self.Obj_FLDQ).filter(self.Obj_FLDQ.DATASET == '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))))[:]
nrow = self.tpfModel.rowCount(None)
if nrow > len(query):
self.tpfModel.removeRows(len(query)-1,nrow-len(query))
logging.debug('More row than needed will delete some.')
for i in range(len(query)):
if i >= nrow:
logging.debug('Increasing row in table.')
self.tpfModel.insertRow(i)
name_query = session_CID.query(self.Obj_CID.FILENAME).filter(self.Obj_CID.id == query[i].id_tvDB)[:]
self.tpfModel.setData(self.tpfModel.createIndex(i,0),name_query[0].FILENAME,QtCore.Qt.DisplayRole)
#logging.debug( name_query[0].FILENAME )
#
#
################################################################################################
################################################################################################
#
#
def readDQObject(self,action):
session_CID = self.Session()
query = session_CID.query(self.Obj_FDQ).filter(self.Obj_FDQ.PID == str(self.dataQuality_ui.comboBox.currentText())).filter(self.Obj_FDQ.OBJECT == str(self.dataQuality_ui.comboBox_Object.currentText())) [:]
if len(query) > 0 and len(str(self.dataQuality_ui.comboBox_Object.currentText())) > 0:
self.dataQuality_ui.comboBox_FIELD.setCurrentIndex( int( query[0].FIELD) )
self.dataQuality_ui.comboBox_6.setCurrentIndex( 0 )
self.dataQuality_ui.lineEdit_5.setText( str( query[0].FIELDNOTE) )
self.dataQuality_ui.lineEdit_6.setText( '' )
logging.debug('fwhm = {0} , ell = {1}'.format(query[0].FWHM,query[0].E))
self.dataQuality_ui.lineEdit_7.setText( str( query[0].FWHM) )
self.dataQuality_ui.lineEdit_8.setText( str( query[0].E) )
else:
self.dataQuality_ui.comboBox_FIELD.setCurrentIndex( 0 )
self.dataQuality_ui.comboBox_6.setCurrentIndex( 0 )
self.dataQuality_ui.lineEdit_5.setText( '' )
self.dataQuality_ui.lineEdit_6.setText( '' )
self.dataQuality_ui.lineEdit_7.setText( '0.' )
self.dataQuality_ui.lineEdit_8.setText( '0.' )
querycfg = session_CID.query(self.Obj_CDQ).filter(self.Obj_CDQ.OBJECT == str(self.dataQuality_ui.comboBox_Object.currentText())).filter(
self.Obj_CDQ.PID == self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())))[:]
self.dataQuality_ui.comboBox_config.clear()
self.dataQuality_ui.comboBox_config.addItem('')
self.dataQuality_ui.comboBox_config.setCurrentIndex(0)
self.dataQuality_ui.lineEdit_6.setText( '' )
logging.debug('{0} {1} {2}'.format( len(querycfg),self.semester_ID.format(self.dataQuality_ui.comboBox.currentText()),str(self.dataQuality_ui.comboBox_Object.currentText()) ))
for i in range(len(querycfg)):
self.dataQuality_ui.comboBox_config.addItem(querycfg[i].CONFIG)
self.dataQuality_ui.pushButton_filtertable.setEnabled(True)
#
#
################################################################################################
################################################################################################
#
#
def readCDQ(self,action):
session_CID = self.Session()
querycfg = session_CID.query(self.Obj_CDQ).filter(self.Obj_CDQ.OBJECT == str(self.dataQuality_ui.comboBox_Object.currentText())).filter(
self.Obj_CDQ.PID == self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())) ).filter(
self.Obj_CDQ.CONFIG == str(self.dataQuality_ui.comboBox_config.currentText()) ) [:]
if len(querycfg) == 1:
self.dataQuality_ui.comboBox_6.setCurrentIndex( int(querycfg[0].STATUS ) )
self.dataQuality_ui.lineEdit_6.setText( querycfg[0].CONFIGNOTE )
elif len(querycfg) > 1:
self.dataQuality_ui.comboBox_6.setCurrentIndex( 0 )#int(querycfg[0].STATUS ) )
self.dataQuality_ui.lineEdit_6.setText( querycfg[0].CONFIGNOTE )
logging.debug( 'WARNING: {0}'.format( len(querycfg)))
else:
self.dataQuality_ui.comboBox_6.setCurrentIndex( 0 )
self.dataQuality_ui.lineEdit_6.setText( '' )
return 0
#
#
################################################################################################
################################################################################################
#
#
def setUpCalibrationDQ(self):
self.setDqMessage(1)
for status in self.dqStatus:
self.dataQuality_ui.comboBias.addItem(status)
self.dataQuality_ui.comboDark.addItem(status)
self.dataQuality_ui.comboFlatField.addItem(status)
self.dataQuality_ui.comboBias.setCurrentIndex(0)
self.dataQuality_ui.comboDark.setCurrentIndex(0)
self.dataQuality_ui.comboFlatField.setCurrentIndex(0)
self.dataQuality_ui.fromDB.setEnabled(False)
self.dataQuality_ui.comboFromDB.setEnabled(False)
self.dataQuality_ui.lineEditFromDB.setEnabled(False)
self.connect(self.dataQuality_ui.Bias, QtCore.SIGNAL('clicked()'), self.addBias)
self.connect(self.dataQuality_ui.Dark, QtCore.SIGNAL('clicked()'), self.addDark)
self.connect(self.dataQuality_ui.FlatField, QtCore.SIGNAL('clicked()'), self.addFlatField)
self.connect(self.dataQuality_ui.fromDB, QtCore.SIGNAL('stateChanged(int)'), self.biasFromDB)
self.setUpCalibrationDQProject()
#
#
################################################################################################
################################################################################################
#
#
def setUpCalibrationDQProject(self):
self.dataQuality_ui.comboBias.setCurrentIndex( 0 )
self.dataQuality_ui.comboDark.setCurrentIndex( 0 )
self.dataQuality_ui.comboFlatField.setCurrentIndex( 0 )
self.dataQuality_ui.lineEditBias.setText( '' )
self.dataQuality_ui.lineEditDark.setText( '' )
self.dataQuality_ui.lineEditFlatField.setText( '' )
session = self.Session()
cb_cal = [self.dataQuality_ui.comboBiasConf,
self.dataQuality_ui.comboDarkConf,
self.dataQuality_ui.comboFlatConf ]
ctype = ['bias','dark','flatfield']
for i in range(len(ctype)):
qq = session.query(self.Obj_CDQ).filter(self.Obj_CDQ.PID == self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))).filter(self.Obj_CDQ.DATASET == '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())))).filter(self.Obj_CDQ.OBJECT == ctype[i])[:]
cb_cal[i].clear()
cb_cal[i].addItem('')
for j in range(len(qq)):
cb_cal[i].addItem(str(qq[j].CONFIG))
cb_cal[i].setCurrentIndex(0)
#
#
################################################################################################
################################################################################################
#
#
def commitCalibrationDataQuality(self):
cb_calconf = [self.dataQuality_ui.comboBiasConf,
self.dataQuality_ui.comboDarkConf,
self.dataQuality_ui.comboFlatConf ]
cb_calstat = [self.dataQuality_ui.comboBias,
self.dataQuality_ui.comboDark,
self.dataQuality_ui.comboFlatField ]
cb_caltext = [self.dataQuality_ui.lineEditBias,
self.dataQuality_ui.lineEditDark,
self.dataQuality_ui.lineEditFlatField ]
ctype = ['bias','dark','flatfield']
session = self.Session()
for i in range(len(ctype)):
qq = session.query(self.Obj_CDQ).filter(self.Obj_CDQ.PID == self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))).filter(self.Obj_CDQ.DATASET == '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())))).filter(self.Obj_CDQ.OBJECT == ctype[i]).filter(self.Obj_CDQ.CONFIG == str(cb_calconf[i].currentText()))[:]
logging.debug('{0} {1}'.format(ctype[i],len(qq)))
if len(qq) > 0:
qq[0].CONFIGNOTE = str(cb_caltext[i].text())
qq[0].STATUS = str(cb_calstat[i].currentIndex())
session.commit()
if len(qq) > 1 :
logging.warning('WARNING: Found duplicate configuration for {0}'.format(ctype[i]))
#
#
################################################################################################
################################################################################################
#
#
def readBiasConf(self):
self.readCalConf('bias')
return 0
#
#
################################################################################################
################################################################################################
#
#
def readDarkConf(self):
self.readCalConf('dark')
return 0
#
#
################################################################################################
################################################################################################
#
#
def readFlatConf(self):
self.readCalConf('flatfield')
return 0
#
#
################################################################################################
################################################################################################
#
#
def readCalConf(self,ctype):
cb_calconf = {'bias' :self.dataQuality_ui.comboBiasConf,
'dark' :self.dataQuality_ui.comboDarkConf,
'flatfield':self.dataQuality_ui.comboFlatConf }
cb_calstat = {'bias' :self.dataQuality_ui.comboBias,
'dark' :self.dataQuality_ui.comboDark,
'flatfield':self.dataQuality_ui.comboFlatField }
cb_caltext = {'bias' :self.dataQuality_ui.lineEditBias,
'dark' :self.dataQuality_ui.lineEditDark,
'flatfield':self.dataQuality_ui.lineEditFlatField }
cb_calstat[ctype].setCurrentIndex(0)
cb_caltext[ctype].setText('')
session = self.Session()
qq = session.query(self.Obj_CDQ).filter(self.Obj_CDQ.PID == self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))).filter(self.Obj_CDQ.DATASET == '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())))).filter(self.Obj_CDQ.OBJECT == ctype).filter(self.Obj_CDQ.CONFIG == str(cb_calconf[ctype].currentText()))[:]
logging.debug('-> {0} {1}'.format(ctype,str(cb_calconf[ctype].currentText())))
for i in range(len(qq)):
logging.debug('--> {0} {1}'.format(qq[0].OBJECT,qq[0].CONFIG))
if len(qq) > 0:
logging.debug('--> {0} {1}'.format(int(qq[0].STATUS),str(qq[0].CONFIGNOTE)))
cb_calstat[ctype].setCurrentIndex(int(qq[0].STATUS))
cb_caltext[ctype].setText(str(qq[0].CONFIGNOTE))
return 0
#
#
################################################################################################
################################################################################################
#
#
def setUpCienceDQ(self):
#self.setDqMessage(2)
for status in self.dqStatus:
self.dataQuality_ui.comboBox_FIELD.addItem(status)
self.dataQuality_ui.comboBox_6.addItem(status)
self.dataQuality_ui.comboBox_FIELD.setCurrentIndex(0)
self.dataQuality_ui.comboBox_6.setCurrentIndex(0)
#
#
################################################################################################
################################################################################################
#
#
def addBias(self):
new = self.add2FLDQ('bias')
self.add2CDQ('bias',new)
self.setUpCalibrationDQProject()
return 0
#
#
################################################################################################
################################################################################################
#
#
def biasFromDB(self,idx):
sMaster = self.MasterSession()
self.dataQuality_ui.comboBiasConf.clear()
self.dataQuality_ui.comboBiasConf.addItem('')
if self.dataQuality_ui.fromDB.isChecked():
ctype = 'bias'
query = sMaster.query(self.Obj_CDQ).filter( self.Obj_CDQ.OBJECT == ctype )[:]
for i in range(len(query)):
self.dataQuality_ui.comboBiasConf.addItem(query[i].CONFIG)
return 0
#
#
################################################################################################
################################################################################################
#
#
def addDark(self):
new = self.add2FLDQ('dark')
self.add2CDQ('dark', new)
self.setUpCalibrationDQProject()
return 0
#
#
################################################################################################
################################################################################################
#
#
def addFlatField(self):
new = self.add2FLDQ('flatfield')
self.add2CDQ('flatfield',new)
self.setUpCalibrationDQProject()
return 0
#
#
################################################################################################
################################################################################################
#
#
def add2CDQ(self,obj=None,new=0):
indexes = self.ui.tableDB.selectedIndexes()
session = self.Session()
query = []
for i in range(len(indexes)):
idx = indexes[i].row() # table row should be equal to id
qq = session.query(self.Obj_CID).filter(self.Obj_CID.id == idx+1)[:]
query.append(qq[0])
fconf,nconf = self.getConf(query,obj)
for i in range(len(fconf)):
_obj = obj
if not obj:
_obj = str(self.dataQuality_ui.comboBox_Object.currentText())
else:
logging.debug('OBJECT will be changed to user specified {0}'.format(_obj))
vals = {'PID': self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())),
'DATASET':'{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText()))),
'NCONF' : nconf[i],
'OBJECT': _obj,
'CONFIG': fconf[i],
'STATUS': '0',
'CONFIGNOTE' : ''}
entry = self.Obj_CDQ(**vals)
qq = session.query(self.Obj_CDQ).filter(self.Obj_CDQ.PID == entry.PID).filter(self.Obj_CDQ.DATASET == entry.DATASET).filter(self.Obj_CDQ.OBJECT == entry.OBJECT).filter(self.Obj_CDQ.CONFIG == entry.CONFIG)[:]
if len(qq) == 0:
logging.debug('Entry not in database')
session.add(entry)
session.commit()
elif new > 0:
logging.debug('Entry already in database, but {0} new files added.'.format(new))
for i in range(len(qq)):
qq[0].NCONF += new
session.commit()
else:
logging.debug('Entry already in database')
#
#
################################################################################################
################################################################################################
#
#
def add2FLDQ(self,ftype):
indexes = self.ui.tableDB.selectedIndexes()
session_CID = self.Session()
new = 0
for i in range(len(indexes)):
idx = self.ui.tableDB.model().index(indexes[i].row(),self.FilenameColumn)
fname = self.ui.tableDB.model().data(idx)
if type(fname) == QtCore.QVariant:
fname = str(fname.toString())
query = session_CID.query(self.Obj_CID.id,self.Obj_CID.INSTRUME,self.Obj_CID.PATH).filter(self.Obj_CID.FILENAME == fname)[:]
qInst = session_CID.query(self.Obj_INSTRUMENTS[query[0].INSTRUME].id).filter(self.Obj_INSTRUMENTS[query[0].INSTRUME].FILENAME.like('%'+fname))[:]
vals = {'id_tvDB':query[0].id,
'id_INSTRUME' : qInst[0].id,
'PID': self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())),
'TYPE': ftype,
'SUBTYPE':ftype,
'FILENAME':fname,
'PATH':query[0].PATH,
'DATASET' : '{date}-{PID}'.format(date=self.dir.split('/')[-1],PID=self.semester_ID.format(str(self.dataQuality_ui.comboBox.currentText())))}
entry = self.Obj_FLDQ(**vals)
query2 = session_CID.query(self.Obj_FLDQ).filter(self.Obj_FLDQ.id_tvDB == entry.id_tvDB).filter(self.Obj_FLDQ.DATASET == entry.DATASET)[:]
if len(query2) == 0:
new += 1
session_CID.add(entry)
iidx = self.tpfModel.rowCount(None)
self.tpfModel.insertRow(iidx)
self.tpfModel.setData(self.tpfModel.createIndex(iidx,0),fname,QtCore.Qt.DisplayRole)
session_CID.commit()
return new
#
#
################################################################################################
################################################################################################
#
#
def excludeFilesFromProgram(self):
sIndex = self.dataQuality_ui.tableProjectFiles.selectedIndexes()
session_CID = self.Session()
ctype = ['bias','dark','flatfield']