ShyLu broken cmake config

[VictorEijkhout]

My attempt to install dealii floundered on the fact that you guys leave behind broken Cmake configuration files. No worry: I'm running a sed script after the trilinos install to fix the files you generate.

But in case you feel ike fixing the problem, here's documentation for this particular case:

%%%%%%%%%%%%%%%%%%%%%
The actual error message (and why configure fails) is here:

12442 -- Include /admin/build/admin/rpms/frontera/BUILD/dealii-9.1.1/cmake/configure/configure_2_trilinos.cmake
12443 CMake Error at /home1/apps/intel19/impi19_0/trilinos/12.18.1/lib/cmake/ShyLU/ShyLUConfig.cmake:156 (INCLUDE):
12444 INCLUDE could not find load file:
12445
12446 /home1/apps/intel19/impi19_0/trilinos/12.18.1/lib/cmake/ShyLU/../ShyLU_Node/ShyLU_NodeConfig.cmake
12447 Call Stack (most recent call first):
12448 /home1/apps/intel19/impi19_0/trilinos/12.18.1/lib/cmake/Trilinos/TrilinosConfig.cmake:130 (INCLUDE)
12449 cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
12450 cmake/modules/FindTRILINOS.cmake:38 (FIND_PACKAGE)
12451 cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
12452 cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
12453 /tmp/dealii-build/CMakeFiles/CMakeTmp/evaluate_expression.tmp:1 (FEATURE_TRILINOS_FIND_EXTERNAL)
12454 cmake/macros/macro_evaluate_expression.cmake:30 (INCLUDE)
12455 cmake/macros/macro_configure_feature.cmake:237 (EVALUATE_EXPRESSION)
12456 cmake/configure/configure_2_trilinos.cmake:303 (CONFIGURE_FEATURE)
12457 cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
12458 CMakeLists.txt:124 (VERBOSE_INCLUDE)

This implies that the CMake configuration that gets installed by
Trilinos is broken.

The file

/home1/apps/intel19/impi19_0/trilinos/12.18.1/lib/cmake/ShyLU/ShyLUConfig.cmake

contains an include on line 156

INCLUDE("${CMAKE_CURRENT_LIST_DIR}/../ShyLU_Node/ShyLU_NodeConfig.cmake")

pointing to a nonexistant file

/home1/apps/intel19/impi19_0/trilinos/12.18.1/lib/cmake/ShyLU/../ShyLU_Node/ShyLU_NodeConfig.cmake
%%%%%%%%%%%%%%%%%%%%%%%

[srajama1]

@jwillenbring Do you know a reason why ShyLConfig.cmake is present and ShyLU_NodeConfig.cmake won't be there ?

@VictorEijkhout Can you give me your configure script ?

[VictorEijkhout]

On , 2020May10, at 03:30, Siva Rajamanickam <notifications@github.com<mailto:notifications@github.com>> wrote: Can you give me your configure script ? ++ cmake -VV -D CMAKE_INSTALL_PREFIX:PATH=/home1/apps/intel19/impi19_0/trilinos/12.18.1 -D CMAKE_BUILD_TYPE:STRING=RELEASE -D BUILD_SHARED_LIBS:BOOL=ON -D Trilinos_VERBOSE_CONFIGURE=ON -D CMAKE_VERBOSE_MAKEFILE=ON -D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF -D Trilinos_ASSERT_MISSING_PACKAGES=OFF -D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=OFF -D Trilinos_ENABLE_TESTS:BOOL=OFF -D Trilinos_ENABLE_EXAMPLES:BOOL=ON -D Trilinos_ENABLE_Export_Makefiles:BOOL=ON -D Trilinos_ENABLE_Fortran:BOOL=ON -D 'CMAKE_C_FLAGS:STRING=-g -xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -mkl' -D 'CMAKE_CXX_FLAGS:STRING=-g -xCORE-AVX2 -axMIC-AVX512,CORE-AVX512 -O2 -mkl -DMPICH_SKIP_MPICXX' -D Trilinos_EXTRA_LINK_FLAGS= -D TPL_ENABLE_MPI:BOOL=ON -D MPI_EXEC:FILEPATH=/opt/apps/xalt/0.6/bin/ibrun -D TPL_MPI_BASE_DIR=/opt/intel/compilers_and_libraries_2019.5.281/linux/mpi/intel64/include/.. -D TPL_MPI_INCLUDE_DIRS=/opt/intel/compilers_and_libraries_2019.5.281/linux/mpi/intel64/include -D TPL_ENABLE_GLM=OFF -D TPL_ENABLE_Matio=OFF -D BLAS_INCLUDE_DIRS:PATH=/opt/intel/compilers_and_libraries_2019.5.281/linux/mkl/include -D BLAS_LIBRARY_DIRS:PATH=/opt/intel/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64 -D 'BLAS_LIBRARY_NAMES:STRING=mkl_intel_lp64;mkl_sequential;mkl_core;pthread' -D LAPACK_INCLUDE_DIRS:PATH=/opt/intel/compilers_and_libraries_2019.5.281/linux/mkl/include -D LAPACK_LIBRARY_DIRS:PATH=/opt/intel/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64 -D 'LAPACK_LIBRARY_NAMES:STRING=mkl_intel_lp64;mkl_sequential;mkl_core;pthread' -D TPL_ENABLE_HDF5:BOOL=ON -D HDF5_INCLUDE_DIRS:PATH=/opt/apps/intel19/impi19_0/phdf5/1.10.4/x86_64/include -D HDF5_LIBRARY_DIRS:PATH=/opt/apps/intel19/impi19_0/phdf5/1.10.4/x86_64/lib -D TPL_ENABLE_Netcdf:BOOL=ON -D Netcdf_INCLUDE_DIRS:PATH=/opt/apps/intel19/impi19_0/parallel-netcdf/4.6.2/x86_64/include -D Netcdf_LIBRARY_DIRS:PATH=/opt/apps/intel19/impi19_0/parallel-netcdf/4.6.2/x86_64/lib -D Trilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON -D Tpetra_INST_INT_LONG_LONG:BOOL=ON -D Tpetra_INST_INT_INT:BOOL=ON -D Tpetra_INST_DOUBLE:BOOL=ON -D Tpetra_INST_FLOAT:BOOL=OFF -D Tpetra_INST_COMPLEX_FLOAT:BOOL=OFF -D Tpetra_INST_COMPLEX_DOUBLE:BOOL=OFF -D Tpetra_INST_INT_LONG:BOOL=OFF -D Tpetra_INST_INT_UNSIGNED:BOOL=OFF -D TPL_ENABLE_Boost:BOOL=ON -D Boost_INCLUDE_DIRS:PATH=/opt/apps/intel19/python3_7/boost/1.69/include -D Boost_LIBRARY_DIRS:PATH=/opt/apps/intel19/python3_7/boost/1.69/lib -D TPL_ENABLE_BoostLib:BOOL=ON -D BoostLib_INCLUDE_DIRS:PATH=/opt/apps/intel19/python3_7/boost/1.69/include -D BoostLib_LIBRARY_DIRS:PATH=/opt/apps/intel19/python3_7/boost/1.69/lib -D TPL_ENABLE_MUMPS:BOOL= -D MUMPS_INCLUDE_DIRS=/home1/apps/intel19/impi19_0/petsc/3.11/skylake/include -D MUMPS_LIBRARY_DIRS=/home1/apps/intel19/impi19_0/petsc/3.11/skylake/lib -D 'MUMPS_LIBRARY_NAMES:STRING=dmumps;mumps_common;pord;mkl_scalapack_lp64;mkl_intel_lp64;mkl_intel_thread;mkl_core;iomp5;mkl_blacs_intelmpi_lp64;pthread;ifcore' -D VLE_TPL_MUMPS_LIBRARIES:STRING=-L/home1/apps/intel19/impi19_0/petsc/3.11/skylake/lib -ldmumps -lmumps_common -lpord -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lmkl_blacs_intelmpi_lp64 -lpthread '-\lifcore' -D 'TPL_ParMETIS_LIBRARIES=/home1/apps/intel19/impi19_0/petsc/3.12/clx/lib/libptscotchparmetis.a;/home1/apps/intel19/impi19_0/petsc/3.12/clx/lib/libparmetis.so' -D TPL_ParMETIS_INCLUDE_DIRS=/home1/apps/intel19/impi19_0/petsc/3.12/clx/include -D Trilinos_ENABLE_Amesos:BOOL=ON -D Trilinos_ENABLE_Amesos2:BOOL=ON -D Amesos2_ENABLE_KLU2:BOOL=ON -D Amesos2_ENABLE_Basker:BOOL=ON -D Trilinos_ENABLE_Anasazi:BOOL=ON -D Trilinos_ENABLE_AztecOO:Bool=ON -D Trilinos_ENABLE_Belos:BOOL=ON -D Trilinos_ENABLE_Epetra:Bool=ON -D Trilinos_ENABLE_EpetraExt:Bool=ON -D Epetra_ENABLE_TESTS:BOOL=ON -D Trilinos_ENABLE_FEI:Bool=ON -D Trilinos_ENABLE_Ifpack:Bool=ON -D Trilinos_ENABLE_Ifpack2:BOOL=ON -D Trilinos_ENABLE_Intrepid:BOOL=ON -D Trilinos_ENABLE_Intrepid2:BOOL=ON -D Intrepid_ENABLE_TESTS:BOOL=ON -D Trilinos_ENABLE_Isorropia:BOOL=ON -D Trilinos_ENABLE_ML:BOOL=ON -D ML_TAKES_SUPERLU_LESS_THAN_5=TRUE -D ML_ENABLE_SuperLU:BOOL=OFF -D Trilinos_ENABLE_MOOCHO:BOOL=ON -D Trilinos_ENABLE_MueLu:BOOL=ON -D MueLu_ENABLE_Tutorial:BOOL=OFF -D MueLu_ENABLE_EXAMPLES:BOOL=OFF -D Trilinos_ENABLE_NOX=ON -D NOX_ENABLE_TESTS:BOOL=OFF -D Trilinos_ENABLE_Pamgen:Bool=ON -D Trilinos_ENABLE_Panzer:Bool=ON -D Trilinos_ENABLE_Phalanx:BOOL=ON -D Phalanx_EXPLICIT_TEMPLATE_INSTANTIATION=ON -D Phalanx_ENABLE_EXAMPLES=OFF -D Trilinos_ENABLE_Piro:BOOL=ON -D Trilinos_ENABLE_Rythmos:BOOL=ON -D Trilinos_ENABLE_Sacado:Bool=ON -D Trilinos_ENABLE_SEACAS:BOOL=ON -D Trilinos_ENABLE_SEACASIoss:BOOL=ON -D Trilinos_ENABLE_SEACASBlot:BOOL=ON -D Trilinos_ENABLE_SEACASExodus:BOOL=ON -D Trilinos_ENABLE_SECONDARY_STABLE_CODE:BOOL=ON -D Trilinos_ENABLE_Shards:BOOL=ON -D Trilinos_ENABLE_ShyLU:BOOL=ON -D Trilinos_ENABLE_Stokhos:BOOL=ON -D Trilinos_ENABLE_Stratimikos:BOOL=ON -D Trilinos_ENABLE_Teko:BOOL=ON -D Trilinos_ENABLE_Teuchos:BOOL=ON -D Teuchos_ENABLE_LONG_LONG_INT:BOOL=ON -D Trilinos_ENABLE_Thyra:BOOL=ON -D Trilinos_ENABLE_Tpetra:BOOL=ON -D Trilinos_ENABLE_TriKota:BOOL=ON -D Trilinos_ENABLE_Zoltan:BOOL=ON -D Trilinos_ENABLE_Zoltan2:BOOL=ON -D Trilinos_ENABLE_Kokkos:BOOL=ON -D Trilinos_ENABLE_KokkosCore:BOOL=ON -D Phalanx_KOKKOS_DEVICE_TYPE:STRING=SERIAL -D Phalanx_INDEX_SIZE_TYPE:STRING=INT -D Phalanx_SHOW_DEPRECATED_WARNINGS:BOOL=OFF -D Kokkos_ENABLE_Serial:BOOL=ON -D Kokkos_ENABLE_OpenMP:BOOL=OFF -D Kokkos_ENABLE_Pthread:BOOL=OFF -D Trilinos_ENABLE_STK:BOOL=ON -D Trilinos_ENABLE_STKIO:BOOL=ON -D Trilinos_ENABLE_STKMesh:BOOL=ON -D Trilinos_ENABLE_PyTrilinos:Bool=OFF -D CMAKE_PYTHON_INCLUDE_DIR:PATH=/opt/apps/intel19/python3/3.7.0/include -D CMAKE_PYTHON_LIBRARIES:STRING=/opt/apps/intel19/python3/3.7.0/lib -D PyTrilinos_DOCSTRINGS:BOOL=OFF -D PyTrilinos_ENABLE_Tpetra:BOOL=OFF -D SWIG_EXECUTABLE:FILEPATH=/home1/apps/intel19/swig/4.0.0/bin/swig -D Trilinos_EXTRA_LD_FLAGS= /admin/build/admin/rpms/frontera/BUILD//trilinos-12.18.1

[srajama1]

@VictorEijkhout : The configure is not doing anything non-stanadard, let me see if @jwillenbring has any suggestions from the @trilinos/framework side.

[jwillenbring]

This could be related to how ShyLU is set up in terms of an unusual sub-package structure.
@bartlettroscoe or @prwolfe do you have any thoughts on this?

[bartlettroscoe]

This could be related to how ShyLU is set up in terms of an unusual sub-package structure.

@jwillenbring, not sure. It is possible this is related to the fact that the current ShyLU package is a pseduo package that has not native libraries or tests. (This may be a hole in the current TriBITS testing.)

In the short term, try just directly including the standard TriBITS packages ShyLU_NodeConfig.cmake and ShyLU_DDConfing.cmake in the sort term.

In the medium and long terms, all of this <Package>Config.cmake code is going to get some serious attention as part of the work outlined in TriBITSPub/TriBITS#63 and TriBITSPub/TriBITS#299.

[prwolfe]

I did a naive test

• built ShyLU with gcc 8.3.0
• installed locally
• created a CMakeLists.txt file with nothing but find_package(Trilinos)

This worked even if I asked for ShyLU as a component. Short of a more significant test I am stumped as to what issue @VictorEijkhout is seeing.

[VictorEijkhout]

On , 2020May12, at 09:56, Paul Wolfenbarger <notifications@github.com<mailto:notifications@github.com>> wrote: Short of a more significant test I think you guys should adopt “build dealii with trilinos support” in your regression suite. That has brought to light quite a few of this sort of breakages in your Cmake whatever. Victor.

[srajama1]

@jwillenbring : @VictorEijkhout has a good point in terms of testing (though I don't know what special thing Deal.ii is doing here). Can you add it to the leaders meeting agenda ?

[VictorEijkhout]

On , 2020May12, at 11:46, Siva Rajamanickam <notifications@github.com<mailto:notifications@github.com>> wrote: (though I don't know what special thing Deal.ii is doing here). I’ll be happy to furnish you with my dealii build script…. V.

[srajama1]

@VictorEijkhout Yes, that would be useful.

[VictorEijkhout]

My dealii install seems relatively straightforward: + cmake -VV -DCMAKE_INSTALL_PREFIX=/home1/apps/intel19/impi19_0/dealii/9.1.1 -DDEAL_II_WITH_CXX11=ON -DDEAL_II_WITH_CXX17=OFF '-DDEAL_II_CXX_FLAGS_DEBUG=-g -march=native -I/opt/intel/compilers_and_libraries_2019.5.281/linux/tbb/include -O0' '-DDEAL_II_CXX_FLAGS_RELEASE=-g -march=native -I/opt/intel/compilers_and_libraries_2019.5.281/linux/tbb/include -O2' -DDEAL_II_COMPONENT_MESH_CONVERTER=ON -DDEAL_II_WITH_MPI=ON -D 'LAPACK_LIBRARIES=/opt/intel/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64_lin/libmkl_intel_lp64.so\;/opt/intel/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64_lin/libmkl_core.so' -DBOOST_DIR=/opt/apps/intel19/python2_7/boost/1.69 -DDEAL_II_WITH_GSL=ON -DGSL_INCLUDE_DIR=/opt/apps/intel19/gsl/2.5/include -DGSL_LIBRARY_DIR=/opt/apps/intel19/gsl/2.5/lib '-DGSL_LIBRARY=/opt/apps/intel19/gsl/2.5/lib/libgsl.so;/opt/apps/intel19/gsl/2.5/lib/libgslcblas.so' -DHDF5_DIR=/opt/apps/intel19/impi19_0/phdf5/1.10.4/x86_64 -DDEAL_II_WITH_METIS=ON -DMETIS_DIR=/opt/apps/intel19/metis/5.1.0 -DMUMPS_DIR= -DDEAL_II_WITH_PETSC=ON -DPETSC_DIR=/home1/apps/intel19/impi19_0/petsc/3.11/ -DPETSC_ARCH=clx -DDEAL_II_WITH_SLEPC=ON -DSLEPC_DIR=/home1/apps/intel19/impi19_0/slepc/3.11 -DDEAL_II_WITH_P4EST=ON -DP4EST_DIR= -DDEAL_II_WITH_TRILINOS=ON -DTRILINOS_DIR=/home1/apps/intel19/impi19_0/trilinos/12.18.1/ /admin/build/admin/rpms/frontera/BUILD/dealii-9.1.1/dealii-9.1.1 /admin/build/admin/rpms/frontera/BUILD/dealii-9.1.1

[srajama1]

@trilinos/framework : Can we add integration tests with deal.ii ?

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