fix: upload/download tracker bugfixes

[bcai2]

• Refactors the tracking printed statements into a pythonic print call with string formatting.
• Fixes status update logic in uploading. (This was causing the terminal output to stall at the "uploading" stage.)
• Adds integration test dirs to .gitignore.

[lebovic]

It looks like the implicit \n in print is still present, the output I see is:

Uploading ./synthetic_bacteroides_reads.fasta
synthetic_bacteroides_reads.fasta  262144 / 1883273.0 bytes (13.92%)                               
synthetic_bacteroides_reads.fasta  524288 / 1883273.0 bytes (27.84%)                               
synthetic_bacteroides_reads.fasta  786432 / 1883273.0 bytes (41.76%)                               
synthetic_bacteroides_reads.fasta  1048576 / 1883273.0 bytes (55.68%)                              
synthetic_bacteroides_reads.fasta  1310720 / 1883273.0 bytes (69.60%)                              
synthetic_bacteroides_reads.fasta  1572864 / 1883273.0 bytes (83.52%)                              
synthetic_bacteroides_reads.fasta  1835008 / 1883273.0 bytes (97.44%)                              
synthetic_bacteroides_reads.fasta  1883273 / 1883273.0 bytes (100.00%)                             

Finished spawning jobs.

Rather than replacing the same line

[bcai2]

Good catch! Should be fixed on the latest commit, give it a try

It looks like the implicit \n in print is still present, the output I see is:

Uploading ./synthetic_bacteroides_reads.fasta
synthetic_bacteroides_reads.fasta  262144 / 1883273.0 bytes (13.92%)                               
synthetic_bacteroides_reads.fasta  524288 / 1883273.0 bytes (27.84%)                               
synthetic_bacteroides_reads.fasta  786432 / 1883273.0 bytes (41.76%)                               
synthetic_bacteroides_reads.fasta  1048576 / 1883273.0 bytes (55.68%)                              
synthetic_bacteroides_reads.fasta  1310720 / 1883273.0 bytes (69.60%)                              
synthetic_bacteroides_reads.fasta  1572864 / 1883273.0 bytes (83.52%)                              
synthetic_bacteroides_reads.fasta  1835008 / 1883273.0 bytes (97.44%)                              
synthetic_bacteroides_reads.fasta  1883273 / 1883273.0 bytes (100.00%)                             

Finished spawning jobs.

Rather than replacing the same line

[lebovic]

👍