ecology.yaml.lock

install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: regionalgam_ab_index
  owner: ecology
  revisions:
  - d0ee713d4758
  tool_panel_section_label: Species abundance
- name: regionalgam_plot_trend
  owner: ecology
  revisions:
  - 58ecd15e6836
  tool_panel_section_label: Species abundance
- name: regionalgam_gls_adjusted
  owner: ecology
  revisions:
  - e2bff90af491
  tool_panel_section_label: Species abundance
- name: regionalgam_glmmpql
  owner: ecology
  revisions:
  - f3e1b6d244a6
  tool_panel_section_label: Species abundance
- name: regionalgam_autocor_acf
  owner: ecology
  revisions:
  - b416a363a2d5
  tool_panel_section_label: Species abundance
- name: regionalgam_flight_curve
  owner: ecology
  revisions:
  - fff507f00b2b
  tool_panel_section_label: Species abundance
- name: regionalgam_gls
  owner: ecology
  revisions:
  - a79f5f0f17ad
  tool_panel_section_label: Species abundance
- name: sample_seqs
  owner: peterjc
  revisions:
  - 7c40a1fbc82e
  tool_panel_section_label: Filter and Sort
- name: datamash_ops
  owner: iuc
  revisions:
  - 562f3c677828
  tool_panel_section_label: Join, Subtract and Group
- name: datamash_reverse
  owner: iuc
  revisions:
  - 0f1724dd59d2
  tool_panel_section_label: Join, Subtract and Group
- name: datamash_transpose
  owner: iuc
  revisions:
  - 22c2a1ac7ae3
  tool_panel_section_label: Join, Subtract and Group
- name: collection_column_join
  owner: iuc
  revisions:
  - 071084070619
  tool_panel_section_label: Join, Subtract and Group
- name: numeric_clustering
  owner: bgruening
  revisions:
  - a3fd214e7555
  tool_panel_section_label: Statistics
- name: text_processing
  owner: bgruening
  revisions:
  - 0a8c6b61f0f4
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 464b9305180e
  tool_panel_section_label: Text Manipulation
- name: prinseq
  owner: iuc
  revisions:
  - 02befcb391f5
  tool_panel_section_label: Text Manipulation
- name: split_file_on_column
  owner: bgruening
  revisions:
  - b60f2452580e
  tool_panel_section_label: Text Manipulation
- name: merge_cols
  owner: devteam
  revisions:
  - f2aac0c5c60d
  tool_panel_section_label: Text Manipulation
- name: coverage
  owner: devteam
  revisions:
  - 4ef9819dc7fb
  tool_panel_section_label: Text Manipulation
- name: merge
  owner: devteam
  revisions:
  - 381cd27bf67a
  tool_panel_section_label: Text Manipulation
- name: intersect
  owner: devteam
  revisions:
  - 33b3f3688db4
  tool_panel_section_label: Text Manipulation
- name: join
  owner: devteam
  revisions:
  - a10f49d9218a
  tool_panel_section_label: Text Manipulation
- name: subtract
  owner: devteam
  revisions:
  - 0145969324c4
  tool_panel_section_label: Text Manipulation
- name: subtract_query
  owner: devteam
  revisions:
  - ff3901618482
  tool_panel_section_label: Text Manipulation
- name: unique
  owner: bgruening
  revisions:
  - 7ce75adb93be
  tool_panel_section_label: Text Manipulation
- name: reshape2_melt
  owner: iuc
  revisions:
  - 317ed0ee8bf2
  tool_panel_section_label: Text Manipulation
- name: reshape2_cast
  owner: iuc
  revisions:
  - d3b66a3a08ca
  tool_panel_section_label: Text Manipulation
- name: add_value
  owner: devteam
  revisions:
  - 745871c0b055
  tool_panel_section_label: Text Manipulation
- name: jq
  owner: iuc
  revisions:
  - 5ff75eb1a893
  tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
  owner: devteam
  revisions:
  - 2e9f3b6ebfbc
  tool_panel_section_label: Text Manipulation
- name: flanking_features
  owner: devteam
  revisions:
  - a09d13b108fd
  tool_panel_section_label: Text Manipulation
- name: cluster
  owner: devteam
  revisions:
  - 05696474ee89
  tool_panel_section_label: Text Manipulation
- name: get_flanks
  owner: devteam
  revisions:
  - 077f404ae1bb
  tool_panel_section_label: Text Manipulation
- name: complement
  owner: devteam
  revisions:
  - 38c8bb402872
  tool_panel_section_label: Text Manipulation
- name: basecoverage
  owner: devteam
  revisions:
  - 2cedec3759e4
  tool_panel_section_label: Text Manipulation
- name: dna_filtering
  owner: devteam
  revisions:
  - 549d2cb4c6f2
  tool_panel_section_label: Text Manipulation
- name: column_order_header_sort
  owner: iuc
  revisions:
  - 6ae9724caf4d
  tool_panel_section_label: Text Manipulation
- name: column_remove_by_header
  owner: iuc
  revisions:
  - 372967836e98
  tool_panel_section_label: Text Manipulation
- name: metagenomeseq_normalization
  owner: iuc
  revisions:
  - d16f7cc26516
  tool_panel_section_label: Text Manipulation
- name: gff3_rebase
  owner: iuc
  revisions:
  - 238981ed43b7
  tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
  owner: bgruening
  revisions:
  - 6c6d26ff01ff
  tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
  owner: peterjc
  revisions:
  - 141612f8c3e3
  tool_panel_section_label: Filter and Sort
- name: transformation
  owner: ethevenot
  revisions:
  - cc0e9eff0de2
  tool_panel_section_label: Statistics
- name: anova
  owner: lecorguille
  revisions:
  - 102049093b7d
  tool_panel_section_label: Statistics
- name: heatmap
  owner: ethevenot
  revisions:
  - b1667c118127
  tool_panel_section_label: Statistics
- name: univariate
  owner: ethevenot
  revisions:
  - 5687435b182c
  tool_panel_section_label: Statistics
- name: multivariate
  owner: ethevenot
  revisions:
  - 5526f8258e8a
  tool_panel_section_label: Statistics
- name: biosigner
  owner: ethevenot
  revisions:
  - fa80bd02055f
  tool_panel_section_label: Statistics
- name: seq_composition
  owner: peterjc
  revisions:
  - 13be788233da
  tool_panel_section_label: Statistics
- name: t_test_two_samples
  owner: devteam
  revisions:
  - c2ffc9885b5a
  tool_panel_section_label: Statistics
- name: plot_from_lda
  owner: devteam
  revisions:
  - 08affc5d2aef
  tool_panel_section_label: Statistics
- name: mine
  owner: devteam
  revisions:
  - 5e2c89443c44
  tool_panel_section_label: Statistics
- name: lda_analysis
  owner: devteam
  revisions:
  - f0b6217f4a0c
  tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
  owner: devteam
  revisions:
  - 04cdbd00dcec
  tool_panel_section_label: Statistics
- name: count_gff_features
  owner: devteam
  revisions:
  - 188392a0d0a8
  tool_panel_section_label: Statistics
- name: correlation
  owner: devteam
  revisions:
  - 24e01abf9e34
  tool_panel_section_label: Statistics
- name: venn_list
  owner: peterjc
  revisions:
  - e13206029a72
  tool_panel_section_label: Graph/Display Data
- name: scatterplot
  owner: devteam
  revisions:
  - efda9a4a50e7
  tool_panel_section_label: Graph/Display Data
- name: histogram
  owner: devteam
  revisions:
  - cdb9e89e2970
  tool_panel_section_label: Graph/Display Data
- name: gmaj
  owner: devteam
  revisions:
  - 2cd5ee197ec7
  tool_panel_section_label: Graph/Display Data
- name: xy_plot
  owner: devteam
  revisions:
  - ecb437f1d298
  tool_panel_section_label: Graph/Display Data
- name: draw_stacked_barplots
  owner: devteam
  revisions:
  - e997b710e38a
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_pca
  owner: iuc
  revisions:
  - 1b9406a1a769
  tool_panel_section_label: Graph/Display Data
- name: pygenometracks
  owner: iuc
  revisions:
  - 0ea86f6bf2a1
  - c171f2b7d76e
  - c237ba772225
  - feab9265552d
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap
  owner: iuc
  revisions:
  - de002ba2b849
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_violin
  owner: iuc
  revisions:
  - 637cf21db396
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap2
  owner: iuc
  revisions:
  - ca7cb0eaad62
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_point
  owner: iuc
  revisions:
  - 9cec81e1b90e
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_histogram
  owner: iuc
  revisions:
  - 536078949ae4
  tool_panel_section_label: Graph/Display Data
- name: tsne
  owner: iuc
  revisions:
  - 53cfe6f313b3
  tool_panel_section_label: Graph/Display Data
- name: best_regression_subsets
  owner: devteam
  revisions:
  - 4f33ec73e445
  tool_panel_section_label: Statistics
- name: principal_component_analysis
  owner: devteam
  revisions:
  - f568051cdf2e
  tool_panel_section_label: Statistics
- name: kernel_principal_component_analysis
  owner: devteam
  revisions:
  - 3d58aa83e4a3
  tool_panel_section_label: Statistics
- name: kernel_canonical_correlation_analysis
  owner: devteam
  revisions:
  - 5ce5a2adb875
  tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
  owner: devteam
  revisions:
  - 9bc0c48a027f
  tool_panel_section_label: Statistics
- name: sklearn_svm_classifier
  owner: bgruening
  revisions:
  - 1a9d5a8fff12
  tool_panel_section_label: Statistics
- name: sklearn_sample_generator
  owner: bgruening
  revisions:
  - 97b467e06354
  tool_panel_section_label: Statistics
- name: sklearn_searchcv
  owner: bgruening
  revisions:
  - 1c4a241bef5c
  tool_panel_section_label: Statistics
- name: sklearn_build_pipeline
  owner: bgruening
  revisions:
  - 913ee94945f3
  tool_panel_section_label: Statistics
- name: sklearn_pairwise_metrics
  owner: bgruening
  revisions:
  - 86020dbc8ef7
  tool_panel_section_label: Statistics
- name: sklearn_nn_classifier
  owner: bgruening
  revisions:
  - e9ba818e7877
  tool_panel_section_label: Statistics
- name: sklearn_numeric_clustering
  owner: bgruening
  revisions:
  - abb5a3f256e3
  tool_panel_section_label: Statistics
- name: sklearn_ensemble
  owner: bgruening
  revisions:
  - e94395c672bd
  tool_panel_section_label: Statistics
- name: sklearn_feature_selection
  owner: bgruening
  revisions:
  - ec25331946b8
  tool_panel_section_label: Statistics
- name: sklearn_data_preprocess
  owner: bgruening
  revisions:
  - 9e43ee712723
  tool_panel_section_label: Statistics
- name: sklearn_clf_metrics
  owner: bgruening
  revisions:
  - 9bf11bbeccc3
  tool_panel_section_label: Statistics
- name: sklearn_regression_metrics
  owner: bgruening
  revisions:
  - 40ee30b5e456
  tool_panel_section_label: Statistics
- name: sklearn_discriminant_classifier
  owner: bgruening
  revisions:
  - 5552eda109bd
  tool_panel_section_label: Statistics
- name: sklearn_generalized_linear
  owner: bgruening
  revisions:
  - b628de0d101f
  tool_panel_section_label: Statistics
- name: sklearn_model_validation
  owner: bgruening
  revisions:
  - cf9aa11b91c8
  tool_panel_section_label: Statistics
- name: scipy_sparse
  owner: bgruening
  revisions:
  - b9ed7b774ba3
  tool_panel_section_label: Statistics
- name: regex_find_replace
  owner: galaxyp
  revisions:
  - 209b7c5ee9d7
  tool_panel_section_label: Text Manipulation
- name: regex_replace
  owner: kellrott
  revisions:
  - 9a77d5fca67c
  tool_panel_section_label: Text Manipulation
- name: fastq_groomer
  owner: devteam
  revisions:
  - 71e5fa25b8a2
  tool_panel_section_label: FASTA/FASTQ
- name: fastqc
  owner: devteam
  revisions:
  - e7b2202befea
  tool_panel_section_label: Quality Control
- name: multiqc
  owner: iuc
  revisions:
  - b2f1f75d49c4
  tool_panel_section_label: Quality Control
- name: mothur_sffinfo
  owner: iuc
  revisions:
  - 12507ed33710
  tool_panel_section_label: Mothur
- name: fastq_combiner
  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ
- name: bwa
  owner: devteam
  revisions:
  - 01ac0a5fedc3
  tool_panel_section_label: RAD-seq
- name: stacks2_ustacks
  owner: iuc
  revisions:
  - 21d2aa544835
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  tool_panel_section_label: RAD-seq
- name: stacks2_cstacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_sstacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_gstacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_populations
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_procrad
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_denovomap
  owner: iuc
  revisions:
  - afdbc7fcce70
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  tool_panel_section_label: RAD-seq
- name: stacks2_refmap
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_tsv2bam
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_clonefilter
  owner: iuc
  revisions:
  - 1b6d07160736
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  tool_panel_section_label: RAD-seq
- name: stacks2_kmerfilter
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks2_shortreads
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_ustacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_cstacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_sstacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_pstacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_genotypes
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_populations
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_sstacks
  owner: iuc
  revisions:
  - 95e37a28704b
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  tool_panel_section_label: RAD-seq
- name: stacks_rxstacks
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_procrad
  owner: iuc
  revisions:
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  tool_panel_section_label: RAD-seq
- name: stacks_refmap
  owner: iuc
  revisions:
  - 4ee074ca88fb
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  tool_panel_section_label: RAD-seq
- name: stacks_clonefilter
  owner: iuc
  revisions:
  - 5d12a1115770
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  tool_panel_section_label: RAD-seq
- name: stacks_assembleperead
  owner: iuc
  revisions:
  - b08cd32d03ad
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  tool_panel_section_label: RAD-seq
- name: stacks_stats
  owner: iuc
  revisions:
  - 3c4c922a4fb0
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  tool_panel_section_label: RAD-seq
- name: gdal_gdaladdo
  owner: ecology
  revisions:
  - 4d9e2b1c73f4
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  tool_panel_section_label: GIS Data Handling
- name: gdal_gdalbuildvrt
  owner: ecology
  revisions:
  - b6152f24b94d
  - cd4373ce2740
  tool_panel_section_label: GIS Data Handling
- name: gdal_gdalinfo
  owner: ecology
  revisions:
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  - 913cab85ce1e
  tool_panel_section_label: GIS Data Handling
- name: gdal_gdal_merge
  owner: ecology
  revisions:
  - 4285576f0690
  - caeb65a2ba87
  tool_panel_section_label: GIS Data Handling
- name: gdal_gdal_translate
  owner: ecology
  revisions:
  - 0c1062baa9a2
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  tool_panel_section_label: GIS Data Handling
- name: gdal_gdalwarp
  owner: ecology
  revisions:
  - daf66eda45b8
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  tool_panel_section_label: GIS Data Handling
- name: gdal_ogr2ogr
  owner: ecology
  revisions:
  - 8c67f7a51e36
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  tool_panel_section_label: GIS Data Handling
- name: gdal_ogrinfo
  owner: ecology
  revisions:
  - 24696f52a90a
  - 7bdf6ee695a8
  tool_panel_section_label: GIS Data Handling
- name: spocc_occ
  owner: ecology
  revisions:
  - 724ad06de5a5
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  tool_panel_section_label: Get Data
- name: dwt_var_perfeature
  owner: devteam
  revisions:
  - 7a15159140d1
  tool_panel_section_label: Statistics
- name: vigiechiro_bilanenrichipf
  owner: ecology
  revisions:
  - 775809e2f6c8
  - 911f80dce38d
  tool_panel_section_label: Animal Detection on Acoustic Recordings
- name: vigiechiro_bilanenrichirp
  owner: ecology
  revisions:
  - 5ad79c210eb9
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  tool_panel_section_label: Animal Detection on Acoustic Recordings
- name: vigiechiro_idcorrect_2ndlayer
  owner: ecology
  revisions:
  - f3fc8d243b1a
  tool_panel_section_label: Animal Detection on Acoustic Recordings
- name: vigiechiro_idvalid
  owner: ecology
  revisions:
  - eb19a5089b56
  tool_panel_section_label: Animal Detection on Acoustic Recordings