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setup.py
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setup.py
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#!/usr/bin/env python
""" Setup script for the gwide package."""
__author__ = 'Tomasz W. Turowski'
from setuptools import setup, find_packages
setup(
name='gwide',
version='0.5.27',
# py_modules=['gwide'],
packages=find_packages(),
install_requires=[
# 'pypeaks',
'pandas',
'ruffus',
'PyYAML',
# 'matplotlib',
# 'numpy'
# 'plotly'
# 'scipy'
],
entry_points='''
[console_scripts]
gwidetRNA=gwide.gwidetRNA:tRNA
gwidemRNA=gwide.gwidemRNA:mRNA
gwiderRNA=gwide.gwiderRNA:rRNA
gwideHittable=gwide.gwideHittable:hittable
gwidePlot=gwide.gwidePlot:plot
getFastaSeqs=gwide.parserTools:getFastaSeqs
getGeneLength=gwide.parserTools:getGeneLength
getIdFromName=gwide.parserTools:getIdFromName
getNameFromId=gwide.parserTools:getNameFromId
getGeneNamesFromGTF=gwide.parserTools:getGeneNamesFromGTF
getNameFromId4Tab=gwide.parserTools:getNameFromId4Tab
''',
scripts=[
'gwide/scripts/sam2deletions.py',
'gwide/scripts/novo2concat.py',
'gwide/scripts/defineTerminator.py',
'gwide/scripts/geneUsage.py',
'gwide/scripts/codonCounter.py',
'gwide/scripts/aminoacidCounter.py'
],
author="Tomasz W. Turowski",
description='Set of tools to downstream analysis of pyCRAC data',
long_description='',
author_email="twturowski@gmail.com",
classifiers=[
'Development Status :: 2 - Pre-Alpha',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: Apache',
'Topic :: Scientific/Engineering :: Bio-Informatics']
)