FYI: Multicore BatchJobs does not work on Solaris Unix (ps -o ucomm not supported)

[HenrikBengtsson]

Just an FYI, multicore BatchJobs does not work on Solaris because the linux-helper shell script uses command-line option -o ucomm when calling ps and this option is not supported on Solaris.

Below is the error reported by CRAN r-patched-solaris-x86 when future.BatchJobs (mine) runs tests relying on multicore BatchJobs tasks:

    Running the tests in ‘tests/BatchJobsFutureError.R’ failed.
    Last 13 lines of output:
     ..$ listJobs :function (conf, reg) 
     ..$ getArrayEnvirName:function () 
     ..- attr(*, "class")= chr "ClusterFunctions"
     Error in dbDoQuery(reg, query) : 
     Error in dbDoQuery. Error in sqliteSendQuery(con, statement, bind.data) : 
     error in statement: near "format": syntax error
     (SELECT job_id FROM BatchJobs_1974974119_job_status WHERE (batch_job_id IN ('ps: illegal option -- w','ps: illegal option -- w','ps: unknown output format: -o ucomm','ps: unknown output format: -o command','usage: ps [ -aAdeflcjLPyZ ] [ -o format ] [ -t termlist ]','[ -u userlist ] [ -U userlist ] [ -G grouplist ]','[ -p proclist ] [ -g pgrplist ] [ -s sidlist ] [ -z zonelist ]',''format' is one or more of:','user ruser group rgroup uid ruid gid rgid pid ppid pgid sid taskid ctid','pri opri pcpu pmem vsz rss osz nice class time etime stime zone zoneid','f s c lwp nlwp psr tty addr wchan fname comm args projid project pset')) AND job_id IN (1))
     Calls: future ... dbFindOnSystem -> dbSelectWithIds -> dbDoQuery -> stopf
     Execution halted
     Error in dbDoQuery(reg, query) : 
     Error in dbDoQuery. Error in sqliteSendQuery(con, statement, bind.data) : 
     error in statement: near "format": syntax error
     (SELECT COUNT(job_id) AS n, COUNT(submitted) AS submitted, COUNT(started) AS started, COUNT(done) AS done, COUNT(error) AS error, SUM(started IS NOT NULL AND done IS NULL AND error IS NULL AND batch_job_id IN ('ps: illegal option -- w','ps: illegal option -- w','ps: unknown output format: -o ucomm','ps: unknown output format: -o command','usage: ps [ -aAdeflcjLPyZ ] [ -o format ] [ -t termlist ]','[ -u userlist ] [ -U userlist ] [ -G grouplist ]','[ -p proclist ] [ -g pgrplist ] [ -s sidlist ] [ -z zonelist ]',''format' is one or more of:','user ruser group rgroup uid ruid gid rgid pid ppid pgid sid taskid ctid','pri opri pcpu pmem vsz rss osz nice class time etime stime zone zoneid','f s c lwp nlwp psr tty addr wchan fname comm args projid project pset')) AS running, SUM(started IS NOT NULL AND done IS NULL AND error IS NULL AND batch_job_id NOT IN ('ps: illegal option -- w','ps: illegal option -- w','ps: unknown output format: -o ucomm','ps: unknown output format: -o command','usage: ps [ -aAdeflcjLPyZ ] [ -o format ] [ -t termlist ]','[ -u userlist ] [ -U userlist ] [ -G grouplist ]','[ -p proclist ] [ -g pgrplist ] [ -s sidlist ] [ -z zonelist ]',''format' is one or more of:','user ruser group rgroup uid ruid gid rgid pid ppid pgid sid taskid ctid','pri opri pcpu pmem vsz rss osz nice class time etime stime zone zoneid','f s c lwp nlwp psr tty addr wchan fname comm args projid project pset')) AS expired, MIN(done - started) AS t_min, AVG(done - started) AS t_avg, MAX(done - started) AS t_max FROM BatchJobs_1974974119_job_status WHERE job_id IN (1)) 
Flavor: r-patched-solaris-x86