Error while installing package with pip install orbit-ml (version 1.1.4.6) #864

SiebertLooijeAtBillyGrace · 2024-03-21T15:09:17Z

Describe the bug
When installing the orbit-ml package (version 1.1.4.6) with pip install orbit-ml it gives the following error:

--- Linking model ---
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" examples/bernoulli/bernoulli.o src/cmdstan/main.o -ltbb stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/tbb/libtbb.so.2 -o examples/bernoulli/bernoulli
rm examples/bernoulli/bernoulli.o examples/bernoulli/bernoulli.hpp
Installed cmdstan-2.34.1
Installed cmdstanpy package.
Compiling stan file in place: orbit/stan/dlt.stan
Traceback (most recent call last):
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-96e2b9e2-4541-4999-b568-8098fe131a8d/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in
main()
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-96e2b9e2-4541-4999-b568-8098fe131a8d/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-96e2b9e2-4541-4999-b568-8098fe131a8d/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 244, in build_wheel
return self._build_with_temp_dir(['bdist_wheel'], '.whl',
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 229, in _build_with_temp_dir
self.run_setup()
File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 174, in run_setup
exec(code, locals())
File "", line 129, in
File "/databricks/python/lib/python3.10/site-packages/setuptools/init.py", line 87, in setup
return distutils.core.setup(**attrs)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973, in run_commands
self.run_command(cmd)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "/databricks/python/lib/python3.10/site-packages/wheel/bdist_wheel.py", line 299, in run
self.run_command('build')
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
self.distribution.run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "/databricks/python/lib/python3.10/site-packages/setuptools/command/build.py", line 24, in run
super().run()
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 132, in run
self.run_command(cmd_name)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
self.distribution.run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "", line 117, in run
File "", line 98, in build_stan_models
File "", line 92, in build_model
TypeError: CmdStanModel.init() got an unexpected keyword argument 'force_compile'
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for orbit-ml
Failed to build orbit-ml
ERROR: Could not build wheels for orbit-ml, which is required to install pyproject.toml-based projects

To Reproduce
pip install orbit-ml==1.1.4.6 on a python 3.10 version

Expected behavior
pip install orbit-ml==1.1.4.2 did work on python 3.10 version,

Screenshots

Environment (please complete the following information):

OS: Linux
Python Version: 3.10

edwinnglabs · 2024-03-21T18:40:44Z

@SiebertLooijeAtBillyGrace

Could you report the version of cmdstanpy (if it does not exist, try pip install cmdstanpy?) ? I suspect it may be just due to the old version of cmdstanpy. According to the doc, force_compile is a valid arg in current cmdstanpy version.

edwinnglabs · 2024-03-21T18:43:08Z

Looks like the version needs to be upgraded to 1.2.1 given the very first commit related to this.

SiebertLooijeAtBillyGrace · 2024-03-22T05:53:52Z

Hi @edwinnglabs, thanks for responding.

When I install pip install cmdstanpy==1.2.1, I get the same error.

Source:

But you are able to install the orbit-ml package in linux on python 3.10 version?

This is the full trace logs:

_Building wheel for orbit-ml (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [460 lines of output]
/databricks/python/lib/python3.10/site-packages/setuptools/config/_apply_pyprojecttoml.py:196: UserWarning: install_requires overwritten in pyproject.toml (dependencies)
warnings.warn(msg)
running bdist_wheel
running build
running build_py
Running build py command.
Not a dry run, run with build
NumExpr defaulting to 8 threads.
Installing CmdStan version: 2.34.1
Install directory: /root/.cmdstan
Downloading CmdStan version 2.34.1

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  Download successful, file: /tmp/tmprh2req_u
  Extracting distribution
  
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*** WARNING: max output size exceeded, skipping output. ***

O_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/queuing_rw_mutex.cpp
g++ -o reader_writer_lock.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/reader_writer_lock.cpp
g++ -o spin_rw_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/spin_rw_mutex.cpp
g++ -o x86_rtm_rw_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/x86_rtm_rw_mutex.cpp
g++ -o spin_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/spin_mutex.cpp
g++ -o critical_section.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/critical_section.cpp
g++ -o mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/mutex.cpp
g++ -o recursive_mutex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/recursive_mutex.cpp
g++ -o condition_variable.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/condition_variable.cpp
g++ -o tbb_thread.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_thread.cpp
g++ -o concurrent_monitor.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/concurrent_monitor.cpp
g++ -o semaphore.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/semaphore.cpp
g++ -o private_server.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/private_server.cpp
g++ -o rml_tbb.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/rml/client/rml_tbb.cpp
sh ../tbb_2020.3/build/version_info_linux.sh g++ -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I. >version_string.ver
g++ -o tbb_misc_ex.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_misc_ex.cpp
g++ -o task.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/task.cpp
g++ -o task_group_context.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/task_group_context.cpp
g++ -o governor.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/governor.cpp
g++ -o market.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/market.cpp
g++ -o arena.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/arena.cpp
g++ -o scheduler.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/scheduler.cpp
g++ -o observer_proxy.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/observer_proxy.cpp
g++ -o tbb_statistics.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_statistics.cpp
g++ -o tbb_main.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_main.cpp
g++ -o concurrent_vector_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/concurrent_vector_v2.cpp
g++ -o concurrent_queue_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/concurrent_queue_v2.cpp
g++ -o spin_rw_mutex_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/spin_rw_mutex_v2.cpp
g++ -o task_v2.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/task_v2.cpp
sh ../tbb_2020.3/build/generate_tbbvars.sh
echo "INPUT (libtbb.so.2)" > libtbb.so
g++ -E -x c++ ../tbb_2020.3/src/tbb/lin64-tbb-export.def -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include > tbb.def
g++ -o tbb_misc.o -c -MMD -O2 -g -DDO_ITT_NOTIFY -DUSE_PTHREAD -pthread -m64 -mrtm -fPIC -flifetime-dse=1 -D__TBB_BUILD=1 -Wall -Wextra -Wno-parentheses -Wno-sized-deallocation -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I. ../tbb_2020.3/src/tbb/tbb_misc.cpp
g++ -fPIC -o libtbb.so.2 concurrent_hash_map.o concurrent_queue.o concurrent_vector.o dynamic_link.o itt_notify.o cache_aligned_allocator.o pipeline.o queuing_mutex.o queuing_rw_mutex.o reader_writer_lock.o spin_rw_mutex.o x86_rtm_rw_mutex.o spin_mutex.o critical_section.o mutex.o recursive_mutex.o condition_variable.o tbb_thread.o concurrent_monitor.o semaphore.o private_server.o rml_tbb.o tbb_misc.o tbb_misc_ex.o task.o task_group_context.o governor.o market.o arena.o scheduler.o observer_proxy.o tbb_statistics.o tbb_main.o concurrent_vector_v2.o concurrent_queue_v2.o spin_rw_mutex_v2.o task_v2.o -ldl -lrt -shared -Wl,-soname=libtbb.so.2 -pthread -m64 -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,--version-script,tbb.def
make[1]: Leaving directory '/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb'
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" bin/cmdstan/print.o stan/lib/stan_math/lib/tbb/libtbb.so.2 -ltbb -o bin/print
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" bin/cmdstan/diagnose.o stan/lib/stan_math/lib/tbb/libtbb.so.2 -ltbb -o bin/diagnose
g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" bin/cmdstan/stansummary.o stan/lib/stan_math/lib/tbb/libtbb.so.2 -ltbb -o bin/stansummary

  --- CmdStan v2.34.1 built ---
  Test model compilation
  cmd: make examples/bernoulli/bernoulli
  cwd: None
  g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials    -DBOOST_DISABLE_ASSERTS          -c -MT stan/src/stan/model/model_header_11_4.hpp.gch -MT stan/src/stan/model/model_header_11_4.d -MM -E -MG -MP -MF stan/src/stan/model/model_header_11_4.d stan/src/stan/model/model_header.hpp
  g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials    -DBOOST_DISABLE_ASSERTS          -c -MT src/cmdstan/main.o -MM -E -MG -MP -MF src/cmdstan/main.d src/cmdstan/main.cpp
  
  --- Translating Stan model to C++ code ---
  bin/stanc  --o=examples/bernoulli/bernoulli.hpp examples/bernoulli/bernoulli.stan
  
  --- Compiling C++ code ---
  g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials    -DBOOST_DISABLE_ASSERTS          -c -Wno-ignored-attributes   -x c++ -o examples/bernoulli/bernoulli.o examples/bernoulli/bernoulli.hpp
  
  --- Linking model ---
  g++ -std=c++1y -pthread -D_REENTRANT -Wno-sign-compare -Wno-ignored-attributes      -I stan/lib/stan_math/lib/tbb_2020.3/include    -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.4.0 -I stan/lib/stan_math/lib/boost_1.81.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials    -DBOOST_DISABLE_ASSERTS               -Wl,-L,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/root/.cmdstan/cmdstan-2.34.1/stan/lib/stan_math/lib/tbb"        examples/bernoulli/bernoulli.o src/cmdstan/main.o       -ltbb   stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a  stan/lib/stan_math/lib/tbb/libtbb.so.2 -o examples/bernoulli/bernoulli
  rm examples/bernoulli/bernoulli.o examples/bernoulli/bernoulli.hpp
  Installed cmdstan-2.34.1
  Installed cmdstanpy package.
  Compiling stan file in place: orbit/stan/dlt.stan
  Traceback (most recent call last):
    File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-6a6b44f3-2770-461a-b4e5-b9630f73e8b7/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
      main()
    File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-6a6b44f3-2770-461a-b4e5-b9630f73e8b7/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
      json_out['return_val'] = hook(**hook_input['kwargs'])
    File "/local_disk0/.ephemeral_nfs/envs/pythonEnv-6a6b44f3-2770-461a-b4e5-b9630f73e8b7/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261, in build_wheel
      return _build_backend().build_wheel(wheel_directory, config_settings,
    File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 244, in build_wheel
      return self._build_with_temp_dir(['bdist_wheel'], '.whl',
    File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 229, in _build_with_temp_dir
      self.run_setup()
    File "/databricks/python/lib/python3.10/site-packages/setuptools/build_meta.py", line 174, in run_setup
      exec(code, locals())
    File "<string>", line 129, in <module>
    File "/databricks/python/lib/python3.10/site-packages/setuptools/__init__.py", line 87, in setup
      return distutils.core.setup(**attrs)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
      return run_commands(dist)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
      dist.run_commands()
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973, in run_commands
      self.run_command(cmd)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
      super().run_command(command)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
      cmd_obj.run()
    File "/databricks/python/lib/python3.10/site-packages/wheel/bdist_wheel.py", line 299, in run
      self.run_command('build')
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
      self.distribution.run_command(command)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
      super().run_command(command)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
      cmd_obj.run()
    File "/databricks/python/lib/python3.10/site-packages/setuptools/command/build.py", line 24, in run
      super().run()
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 132, in run
      self.run_command(cmd_name)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
      self.distribution.run_command(command)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
      super().run_command(command)
    File "/databricks/python/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
      cmd_obj.run()
    File "<string>", line 117, in run
    File "<string>", line 98, in build_stan_models
    File "<string>", line 92, in build_model
  TypeError: CmdStanModel.__init__() got an unexpected keyword argument 'force_compile'
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for orbit-ml
Failed to build orbit-ml
ERROR: Could not build wheels for orbit-ml, which is required to install pyproject.toml-based projects_

SiebertLooijeAtBillyGrace · 2024-03-22T15:39:29Z

Update:
For now we went back to %pip install orbit-ml==1.1.4.2, which seems to work again. However 1.1.4.6 does not seem to work.

edwinnglabs · 2024-03-22T18:05:55Z

I still wonder whether the cmdstanpy is >= 1.2.1. Could you print the version right before you install orbit-ml? @SiebertLooijeAtBillyGrace

SiebertLooijeAtBillyGrace added the bug Something isn't working label Mar 21, 2024

swotai mentioned this issue Mar 23, 2024

Cmdstanpy version, and force compile logic #865

Merged

edwinnglabs closed this as completed in #865 Mar 23, 2024

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Error while installing package with pip install orbit-ml (version 1.1.4.6) #864

Error while installing package with pip install orbit-ml (version 1.1.4.6) #864

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edwinnglabs commented Mar 22, 2024

Error while installing package with pip install orbit-ml (version 1.1.4.6) #864

Error while installing package with pip install orbit-ml (version 1.1.4.6) #864

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