CellPopAge-epigenetic-clock

A CellPopAge epigenetic clock for expedited discovery of anti-ageing compounds in vitro.

Installation

First clone the repository to some directory using

git clone git@github.com:ucl-medical-genomics/CellPopAge-epigenetic-clock.git

It is advisable to run any analysis within a virtual environment. The software in this repository requires python3.

To setup a virtual environment.

python3 -m venv <NAME OF ENVIROMENT>

Then activate the environment and install the required software:

source <NAME OF ENVIROMENT>/bin/activate
pip install numpy
pip install scipy

for the example notebook you will also need

pip install pandas

To Run

See the python notebook on how to run Example.ipynb