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fastq-tools

small programs that can be used to deal with fastq sequences

fastqQtrim.c

fastqQtrim.c can 3' and 5' regions of the fastq sequences. This program will filter out short sequences and can trim long sequences into specified length. It can also trim sequences after a residue which have lower quality value tha specified.

fastqPair.pl

fastqPair.pl can extract non-broken pairs from paired end read fastq format sequences.