PicturedRocks is a python package that implements information-theoretic feature selection algorithms for scRNA-seq analysis.
Please ensure you have Python 3.6 or newer and have numba and scikit-learn installed. The best way to get Python and various dependencies is with Anaconda or Miniconda. Once you have a conda environment, run conda install numba scikit-learn. Then use pip to install PicturedRocks and all additional dependencies:
pip install picturedrocksTo install the latest code from github, clone our github repository. Once inside the project directory, instal by running pip install -e .. The -e option will point a symbolic link to the current directory instead of installing a copy on your system. This allows you to update picturedrocks by pulling the latest commit from github.
FeatureSelectionTutorial.ipynb read preprocessing plot markers interactive performance
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