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As the Phase 1 of the ICAv2 pipeline migration plan; we need to do:
Steps
1. Generate v2-SampleSheet in the Run data location in ICAv1 GDS 2. Copy the Run (raw) data from ICAv1 to (BSSH linked) ICAv2 3. Auto-launch BCL Convert (version 4.2.7) using ILMN provided bundle
4. Deploy bssh manager service (renamed to bssh_fastq_copy_service)
5. Deploy the icav2_copy_batch_utility as its own step functions service
6. Deploy the cttso_v2_pipeline_manager service
[EDIT]
Steps 1, 2, 3 as an "bridge" application break it down to another task #140
Prior work items:
There are already prior arts / existing tooling build for this by Alexis. We now basically need to operationalise these tools using StepFunction as its orchestration around executing the steps mentioned above^^.
Context:
As the Phase 1 of the ICAv2 pipeline migration plan; we need to do:
Steps
1. Generate v2-SampleSheet in the Run data location in ICAv1 GDS2. Copy the Run (raw) data from ICAv1 to (BSSH linked) ICAv23. Auto-launch BCL Convert (version 4.2.7) using ILMN provided bundle4. Deploy
bssh manager service(renamed to bssh_fastq_copy_service)5. Deploy the icav2_copy_batch_utility as its own step functions service
6. Deploy the cttso_v2_pipeline_manager service
Prior work items:
There are already prior arts / existing tooling build for this by Alexis. We now basically need to operationalise these tools using StepFunction as its orchestration around executing the steps mentioned above^^.
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