Error models for PacBio and Nanopore

[raw937]

First, love this tool.
Wondering if the error models for PacBio and Nanopore will be a including in a future release?
Or how would you recommend to include it?

Many thanks,
Rick

[ninewise]

Hi Rick,

I'm afraid I don't have expertise in training new error models. The tool currenlty uses the models that were included with FragGeneScan. I'll ask around with my colleagues though, and keep you posted.

Cheers,
Felix

[bmesuere]

@raw937

Sorry it took a while to get back to you. The models that are used in FGSrs are the original ones that were published with the original FGS release. Since they didn't publish their training code, we can't add new models ourselves. However, if they would provide a model for PacBio and Nanopore, you could use it in FGSrs as well. I would thus suggest contacting the people behind FGS.