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about.html.erb
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<div class="about">
<h1>About Unipept</h1>
<div class="row">
<div class="col-xs-8">
<p>The Unipept web application supports biodiversity analysis of large and complex metaproteome samples. Its underlying index structure is designed to quickly retrieve all occurrences of a tryptic peptide in UniProt entries. Taxon-specificity of the tryptic peptide is successively derived from these occurrences using a novel lowest common ancestor approach that is robust against taxonomic misarrangements, misidentifications and inaccuracies. This application consists of four separate functionalities: the <a href="<%= search_single_path %>">Tryptic Peptide Analysis</a>, the <a href="<%= datasets_path %>">Metaproteomics Analysis</a>, the <a href="<%= peptide_finder_path %>">Unique Peptide Finder</a> and the <a href="<%= peptidome_clustering_path %>">Peptidome Clustering</a>.</p>
<p>The initial Unipept publication can be found at <a href="http://dx.doi.org/10.1021/pr300576s">Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples</a>, a follow up publication can be found at <a href="http://dx.doi.org/10.1002/pmic.201400361">The Unipept Metaproteomics Analysis Pipeline</a>. The API was published as <a href="http://dx.doi.org/10.1093/bioinformatics/btw039">Unipept Web Services for Metaproteomics Analysis</a>.</p>
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<h2 class='card-title-text'>How to cite Unipept</h2>
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<p>
If you use Unipept for your research, please cite:
</p>
<ul>
<li>API: Mesuere et al. (2016) Bioinformatics <a href="http://dx.doi.org/10.1093/bioinformatics/btw039" target="_blank">doi:10.1093/bioinformatics/btw039</a></li>
<li>General: Mesuere et al. (2015) Proteomics <a href="http://dx.doi.org/10.1002/pmic.201400361" target="_blank">doi:10.1002/pmic.201400361</a></li>
<li>General: Mesuere et al. (2012) J. Proteome Res. <a href="http://dx.doi.org/10.1021/pr300576s" target="_blank">doi:10.1021/pr300576s</a></li>
</ul>
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<img src="<%= asset_path('poster.jpg') %>" alt="poster">
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<div class="row">
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<h2>Team</h2>
<ul>
<li><strong>Bart Mesuere</strong> PhD student and lead developer</li>
<li><strong>Peter Dawyndt</strong> PhD supervisor</li>
<li><strong>Toon Willems</strong> Master's student 2013-2014</li>
<li><strong>Tom Naessens</strong> Master's student 2014-2015</li>
<li><strong>Felix Van der Jeugt</strong> Master's student 2014-2015</li>
<li><strong>Peter Vandamme</strong> PhD co-supervisor</li>
<li><strong>Bart Devreese</strong> PhD co-supervisor</li>
</ul>
<p>For indivitual contributions, <a href="https://github.com/unipept/unipept/graphs/contributors">the github contributors page</a> is the most informative.</p>
</div>
<div class="col-xs-6">
<h2>Technology</h2>
<p>All unipept code is open source and available on <a href="http://github.com/unipept/unipept">github</a>.</p>
<p>Unipept itself also uses several open source projects:</p>
<ul>
<li><a href="https://github.com/rails/rails">Ruby on Rails</a>: web framework</li>
<li><a href="http://getbootstrap.com">Bootstrap</a>: front-end framework</li>
<li><a href="http://d3js.org/">D3.js</a>: JavaScript library for manipulating documents based on data</li>
</ul>
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<h2>Disclaimer</h2>
<p>
We make no warranties regarding the correctness of the data, and disclaim liability for damages resulting from its use.
</p>
</div>