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DESCRIPTION
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DESCRIPTION
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Package: admixtools
Type: Package
Title: Inferring demographic history from genetic data
Version: 2.0.4
Authors@R: as.person(c(
"Robert Maier <robertmaier@gmx.net> [aut, cre]",
"Nick Patterson <nickp@broadinstitute.org> [aut]"
))
Description: admixtools is a set of methods used to infer demographic history from genetic data using f-statistics.
It was originally implemented as a command line program in C. This is a new implementation of the programs
qpDstat, qpAdm, qpGraph, and contains several new features.
It is efficient because it precomputes f2-statistics which can be re-used for many analyses.
Depends: R (>= 3.5.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
URL: https://github.com/uqrmaie1/admixtools
BugReports: https://github.com/uqrmaie1/admixtools/issues
LinkingTo: Rcpp, RcppArmadillo
Imports:
abind,
cli,
crayon,
cubelyr,
data.tree,
digest,
doParallel,
dplyr (>= 1.0.0),
foreach,
furrr,
future,
ggplot2,
grDevices,
igraph,
lobstr,
magrittr,
quadprog,
purrr,
Rcpp,
RcppArmadillo,
readr,
rlang,
stats,
stringi,
stringr,
tibble,
tidyr (>= 1.0.0),
utils
Suggests:
DT,
genio,
gridExtra,
htmlwidgets,
knitr,
plotly,
rmarkdown,
shiny,
shinyjs,
shinyBS,
shinyFiles,
shinyalert,
shinythemes,
shinyWidgets,
shinydashboard,
tidyverse
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr