Aging Brain project

Folder structure

This is the public repository for "Aging desexualizes the Drosophila brain transcriptome".

• The Rmd/html notebook with the code is under code/.
• Raw data, along with Tissue Specificity data and other metadata, is under data/
• Reproducibility information for data preprocessing (softwares versions, parameters and logs) is under data/preprocessing

Clone this repository

To download the repository, install git and run:

git clone https://github.com/urbfr20/aging_brain.git

Otherwise, it is possible to download the repository from the browser by clicking on the green "Code" button, then "Download Zip"

Installing the Conda environment

To reproduce the results in this work, install all necessary packages by downloading and setting up Miniconda here.

Then, run the following command from the repository base folder:

conda env create -f environment.yaml

Followed by:

conda activate aging_brain

Then, open rstudio (or similar) from the environment prompt:

(aging_brain):~/aging_brain$ rstudio code/Analysis.Rmd