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Can AlphaFold2 predict the structure of cyclic peptides? #33

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JustinDoIt opened this issue Sep 8, 2021 · 0 comments
Open

Can AlphaFold2 predict the structure of cyclic peptides? #33

JustinDoIt opened this issue Sep 8, 2021 · 0 comments

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@JustinDoIt
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I have a cyclic peptide sequence. I put it into Alphafold2 Colab, but I didn't get a cyclic peptide structure. What should I do to connect the C-terminal and N-terminal for the next dynamic simulation (GROMACS)?

Should I do some processing on the structure obtained by Alphafold2 Colab for Gromacs dynamics? Or input sequence to Alphafold2 Colab need for some pre-processing? Or can Alphafold2 not predict the sequence of cyclic peptides?

It's really important for my research, thanks for any help.

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