Run Multiple Codon Table Numbers

[brettyout]

Hello,
I'm using orfipy for viral detection. I have a range of codon table numbers I'd like to run. Looks like --table only takes a single integer, and the json file only accepts a single . Please correct me if I'm wrong about this! Would be convenient to add an option to search multiple codon tables at the same time. In its current state, I have to run orfipy multiple times and combine the results.
Brett

[urmi-21]

Hi @brettyout you are correct. As of now single table is supported. I feel you could write a bash or python script to execute orfipy with multiple tables. I can try to add this feature in a future release. Thanks for the suggestion.