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Talked with @diazrenata and came up with the following ideas for getting the number of knots right:
(re-) read ?choose.k and do the thing where you look for patterns in the residuals
work with even more aggregated data to start with (for faster iteration)
Follow through to ultimate analysis (map of marginal slopes with non-significant areas greyed out) because if changes in k don't produce qualitative statistical changes, they probably don't matter much
possibly increase kmore in the interaction term than in the main effects (maybe should ask someone if this is a legit thing to do though)
So not sure what the "neighborhoods" are when NCV is applied to a raster dataset. Is it some area around every pixel? If so, that feels impractical. Going to do some reading about spatial CV:
Brenning, A., 2012. Spatial cross-validation and bootstrap for the assessment of prediction rules in remote sensing: The R package sperrorest, in: 2012 IEEE International Geoscience and Remote Sensing Symposium. Presented at the 2012 IEEE International Geoscience and Remote Sensing Symposium, pp. 5372–5375. https://doi.org/10.1109/IGARSS.2012.6352393
Le Rest, K., Pinaud, D., Monestiez, P., Chadoeuf, J., Bretagnolle, V., 2014. Spatial leave-one-out cross-validation for variable selection in the presence of spatial autocorrelation. Global Ecology and Biogeography 23, 811–820. https://doi.org/10.1111/geb.12161
Talked with @diazrenata and came up with the following ideas for getting the number of knots right:
?choose.k
and do the thing where you look for patterns in the residualsk
don't produce qualitative statistical changes, they probably don't matter muchk
more in the interaction term than in the main effects (maybe should ask someone if this is a legit thing to do though)Originally posted by @Aariq in #23 (comment)
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