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Implement report generation based on Word templates #102

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holtgrewe opened this issue Apr 7, 2021 · 0 comments
Open

Implement report generation based on Word templates #102

holtgrewe opened this issue Apr 7, 2021 · 0 comments
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enhancement New feature or request

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@holtgrewe
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holtgrewe commented Apr 7, 2021

Is your feature request related to a problem? Please describe.
For generating persistent reports it would be useful to generate print-format reports based on Word templates.

Describe the solution you'd like
Allow users to upload Word .docx files as "mail merge" style templates (cf. https://pbpython.com/python-word-template.html). Make available the following information:

  • case name
  • index name
  • HPO term list (ID + name/description)
  • variants flagged as causative / candidate / ACMG 4/5
    • genome coordinates
    • gene / HGVS coordinates
    • extra annotations: CADD, SIFT, SpliceAI

Describe alternatives you've considered
N/A

Additional context
Related issue: #55

Useful components:

@holtgrewe holtgrewe added the enhancement New feature or request label Apr 7, 2021
@holtgrewe holtgrewe added this to the v0.24 milestone Apr 7, 2021
@holtgrewe holtgrewe removed this from the v0.24 milestone Apr 9, 2021
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Labels
enhancement New feature or request
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Status: Backlog
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