spotsInBox not working

[vrrenske]

The function which connects spot (fluorescence) data to mesh (segmentation) data from 2 different sources, is giving out an error. This can cause errors in:

spotsInBox()
objectsInBox()
createPlotList()

I am working on the resolution of this at the moment and will keep you updated.

[vrrenske]

The issue is now resolved in the development version of BactMAP. Please use

remotes::install_github("vrrenske/bactmap")

to install bactMAP until the next update if you want to use this functionality.

[0Bernhard]

Hello

I downloaded it from your repository but i am still getting an error. Is this something somone else has seen?

thank you

plots_Bacillus <- createPlotList(spotdata=spots_Bacillus$spotframe,

•                              meshdata=mesh_Bacillus$mesh,
  

•                              groups=5)
  

Did not find cell data in spot dataset. Running spotsInBox to connect spots to meshes...
Package 'SDMTools' needed for this function to work. Press 'y' to install, or any other key to cancel.y
Installing package into ‘C:/Users/Berni/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
=======Error in loadNamespace(name) : there is no package called ‘SDMTools’
In addition: Warning message:
package ‘SDMTools’ is not available (for R version 3.6.3)

[vrrenske]

Hi! I will double check this week. The package SDMTools is deprecated in the latest function of CRAN. I thought I replaced the SDMTools functions completely in the version of my repository - but it looks like I missed one function. I will keep you posted!

[vrrenske]

I forgot to update that now it is resolved in the development version on my repository (vrrenske/bactmap).
I am working on an update of the "stable" version this week that has all the bug fixes of the last months.