extr_SuperSeggerClist issues

[batflorez]

when running the extr_SuperSeggerClist function it shows the following error: Error in getphylolist_SupSeg(datasegger) :
(list) object cannot be coerced to type 'double'.
I suspect that it doesn't accept the datasegger frame if it's not numeric. But I'm not sure how to correct this within the function getphylolist_SupSeg. Any suggestions?

[vrrenske]

Hi! I'm sorry for my late reply, I'm working on it this week. Do you have your own data or does this also happen with the example files?

[batflorez]

I've tried my own clists only, I didn't find clists on the example files. Please find attached my own file.
testing_clist.zip
btw, I am running bactMAP on MAC, but I did the installations as explained here.

thanks a lot in advance!

[vrrenske]

Hello! I checked your clist quickly - it seems like you have multiple cells with the same ID in the file, even though they have different daughter/mother cells. Are these more clists combined?
I have to admit that the extr_SuperSeggerClist function is quite limited (I haven't used SuperSegger a lot myself), so if there is anything specific you want to do let me know (also possible email ). I might be able to add some functionality if you need to.

[batflorez]

Apologies for the delay. Yes correct these clist were combined in SuperSegger, they belong to different XY positions. I use SuperSegger heavily and I thought would be great to do the plotting in bactMAP instead. I will contact you via email to discuss. Thank you!