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I would like to use SCUEL-WG tool on HIV whole genomes we have generated so that we can study their subtype and the presence of potential recombinants.
I have installed hyphy using bioconda HYPHY 2.5.8(MP) for Linux on x86_64
and then cloned the hyphy-analyses and try to run the script using this
$ cd hyphy-analyses/SCUEAL-WG/
$ hyphy ./SCUEALfullG.bf --alignment ../testRS.fas
But I have got this error
Error:
Could not read command file from '/localdisk/software/SCUEAL_fullG/SCUEAL-master/TopLevel/MPIScreenFASTA.bf' (expanded to '/localdisk/software/SCUEAL_fullG/SCUEAL-master/TopLevel/MPIScreenFASTA.bf') in call to ExecuteAFile("/localdisk/software/SCUEAL_fullG/SCUEAL-master/TopLevel/MPIScreenFASTA.bf", /home/juan/hyphy-analyses/SCUEAL-WG/./, inArguments);
Function call stack
1 : ExecuteAFile("/localdisk/software/SCUEAL_fullG/SCUEAL-master/TopLevel/MPIScreenFASTA.bf", /home/juan/hyphy-analyses/SCUEAL-WG/./, inArguments);
Keyword arguments:
{
"alignment":"../testRS.fas"
}
-------
Check errors.log for execution error details.
I am not familiar with hyphy so I would appreciate any help/advice on how to use SCUEAL-WG, as it would be very useful for us.
Regards
Juan
The text was updated successfully, but these errors were encountered:
Dear hyphy team,
I would like to use SCUEL-WG tool on HIV whole genomes we have generated so that we can study their subtype and the presence of potential recombinants.
I have installed hyphy using bioconda
HYPHY 2.5.8(MP) for Linux on x86_64
and then cloned the hyphy-analyses and try to run the script using this
But I have got this error
I am not familiar with hyphy so I would appreciate any help/advice on how to use SCUEAL-WG, as it would be very useful for us.
Regards
Juan
The text was updated successfully, but these errors were encountered: