Merge pull request #90 from sasaray/master

Updating documentation and README
KaliLab · Apr 20, 2017 · 1a8d635 · 1a8d635
2 parents ef6ef71 + 1180ac9
commit 1a8d635
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diff --git a/README.md b/README.md
@@ -10,7 +10,7 @@ Get a read only copy of optimizer
 Install `git` and type:
 
 
-    git clone https://github.com/vellamike/optimizer.git
+    git clone https://github.com/KaliLab/optimizer.git
 
 More information on this here: http://rogerdudler.github.com/git-guide/
 

diff --git a/compare/Genesis/VClamp_surrogate/SA_run b/compare/Genesis/VClamp_surrogate/SA_run
diff --git a/compare/Genesis/ca1pc_anat/SA_run b/compare/Genesis/ca1pc_anat/SA_run
diff --git a/compare/Genesis/ca1pc_simplification/SA_run b/compare/Genesis/ca1pc_simplification/SA_run
diff --git a/compare/Genesis/hh_pas_surrogate/SA_run b/compare/Genesis/hh_pas_surrogate/SA_run
diff --git a/doc/conf.py b/doc/conf.py
@@ -257,4 +257,5 @@ def __getattr__(cls, name):
 MOCK_MODULES = ['inspyred','wx','ec','inspyred.ec','pyelectro','scipy','numpy','analysis',
                 'pyelectro.analysis','interpolate','scipy.interpolate','matplotlib',
                 'matplotlib.backends.backend_wxagg','backends.backend_wxagg','backend_wxagg','gtk']
-sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES)
+#sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES)
+
diff --git a/doc/install.rst b/doc/install.rst
@@ -8,7 +8,7 @@ Get a read only copy of optimizer
 Install `git` and type:
 
 
-    git clone https://github.com/vellamike/optimizer.git
+    git clone https://github.com/KaliLab/optimizer.git
 
 More information on this here: http://rogerdudler.github.com/git-guide/
 

diff --git a/html/.doctrees/environment.pickle b/html/.doctrees/environment.pickle
diff --git a/html/.doctrees/install.doctree b/html/.doctrees/install.doctree
diff --git a/html/.doctrees/optimizer.doctree b/html/.doctrees/optimizer.doctree
diff --git a/html/_sources/install.txt b/html/_sources/install.txt
@@ -8,7 +8,7 @@ Get a read only copy of optimizer
 Install `git` and type:
 
 
-    git clone https://github.com/vellamike/optimizer.git
+    git clone https://github.com/KaliLab/optimizer.git
 
 More information on this here: http://rogerdudler.github.com/git-guide/
 
@@ -72,7 +72,7 @@ Installing Neuron as a python package is optional since Optimizer can use any ex
 WARNING: Many features of Optimizer are designed to work with Neuron, so we recommend that you install it!
 Installing Neuron as a python package is beyond the scope of this tutorial as it is somewhat complicated, but you can find a step-by-step guide at:
 
-    http://www.davison.webfactional.com/notes/accessing-hoc-python/
+    http://andrewdavison.info/notes/installation-neuron-python/
 
 Install optimizer
 ------------------