You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Description AddGOGeneList.manual() missing in if (TRUE) source('~/GitHub/Packages/Seurat.pipeline/elements/Differential.gene.expression.Loop.R'); create_set_Original_OutDir()
AddGOGeneList.manual<-function(obj=combined.obj, GO='GO:0034976'# Add GO terms via Biomart package
, genes= c("A0A140VKG3", "ARX", "CNTN2", "DRD1", "DRD2", "FEZF2", "LHX6")) {
genes<- IntersectWithExpressed(obj=obj, genes=genes)
if (is.null(obj@misc$GO)) obj@misc$GO<-list()
obj@misc$GO[[make.names(GO)]] <-genes
iprint("Genes in", GO, "are saved under obj@misc$GO$", make.names(GO))
if (web.open) system(paste0("open https://www.ebi.ac.uk/QuickGO/search/", GO))
return(obj)
}
The text was updated successfully, but these errors were encountered:
Description
AddGOGeneList.manual()
missing inif (TRUE) source('~/GitHub/Packages/Seurat.pipeline/elements/Differential.gene.expression.Loop.R'); create_set_Original_OutDir()
The text was updated successfully, but these errors were encountered: