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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>omicidxClient • omicidxClient</title>
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<script src="pkgdown.js"></script><meta property="og:title" content="omicidxClient">
<meta property="og:description" content="This package contains code and documentation
for understanding metadata for the curated metagenomics project.">
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<body data-spy="scroll" data-target="#toc">
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<span class="navbar-brand">
<a class="navbar-link" href="index.html">omicidxClient</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.0.15</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
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<a href="index.html">
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<a href="reference/index.html">Reference</a>
</li>
<li class="dropdown">
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Articles
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<li>
<a href="articles/md4mg.html">md4mg: metadata for metagenomics</a>
</li>
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<ul class="nav navbar-nav navbar-right">
<li>
<a href="https://github.com/vjcitn/omicidxClient">
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<!--/.nav-collapse -->
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</header><div class="row">
<div class="contents col-md-9">
<div id="omicidxclient" class="section level1">
<div class="page-header"><h1 class="hasAnchor">
<a href="#omicidxclient" class="anchor"></a>omicidxClient</h1></div>
<p>This site discusses interrogation of metadata related to NCBI SRA in the <a href="https://api.omicidx.cancerdatasci.org/swaggerdoc">OmicIDX system</a> by Sean Davis of NCI.</p>
<p>This site also provides specific background on metadata handling for the <a href="https://github.com/waldronlab">Waldronlab</a> <a href="https://waldronlab.io/curatedMetagenomicData/">curatedMetagenomicsData project</a>.</p>
<p>Our objective in this site is to explain and exercise OmicIDX.</p>
<p>Hit the <a href="https://vjcitn.github.io/omicidxClient/articles/md4mg.html">Get started</a> button to start learning about these resources.</p>
</div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
<div class="links">
<h2>Links</h2>
<ul class="list-unstyled">
<li>Browse source code at <br><a href="https://github.com/vjcitn/omicidxClient/">https://github.com/vjcitn/omicidxClient/</a>
</li>
<li>Report a bug at <br><a href="https://github.com/vjcitn/omicidxClient/issues/new/choose">https://github.com/vjcitn/omicidxClient/issues/new/choose</a>
</li>
</ul>
</div>
<div class="license">
<h2>License</h2>
<ul class="list-unstyled">
<li><a href="LICENSE.html">Full license</a></li>
<li><small><a href="https://opensource.org/licenses/mit-license.php">MIT</a> + file <a href="LICENSE-text.html">LICENSE</a></small></li>
</ul>
</div>
<div class="developers">
<h2>Developers</h2>
<ul class="list-unstyled">
<li>Vincent Carey <br><small class="roles"> Author, maintainer </small> <a href="https://orcid.org/0000-0003-4046-0063" target="orcid.widget" aria-label="ORCID"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a> </li>
<li>Sean Davis <br><small class="roles"> Author, contributor </small> </li>
</ul>
</div>
</div>
</div>
<footer><div class="copyright">
<p>Developed by Vincent Carey, Sean Davis.</p>
</div>
<div class="pkgdown">
<p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
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