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Releases: vladsavelyev/TargQC

1.8.1

11 Sep 09:35
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Update conda package

1.4.4

23 Apr 23:52
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  • Create bioconda package

  • Support custom genomes. Provide a path to indexed fasta file with -g:

targqc *.bam --bed target.bed -o results -g /path/to/some_genome.fa

When running from BAMs, only the .fai index is used, and the fasta file itself can be non-existent.
When running from fastq, bwa indexes are also required.

  • Add script to build Venn diagram for a set of BED files:
bed_venn.py *.bed -o res_dir