Add cluster packages, minor fixes.

pkgs/cluster/005-torque.sh

@@ -0,0 +1,59 @@
+#!/bin/bash
+
+####################################################################################################
+# import the BLDR system
+####################################################################################################
+
+source "bldr.sh"
+
+####################################################################################################
+# setup pkg definition and resource files
+####################################################################################################
+
+pkg_name="torque"
+pkg_vers="2.5.7"
+
+pkg_info="The TORQUE Resource Manager provides control over batch jobs and distributed computing resources."
+
+pkg_desc="TORQUE Resource Manager provides control over batch jobs and distributed computing resources. 
+
+It is an advanced open-source product based on the original PBS project* and incorporates the best 
+of both community and professional development. It incorporates significant advances in the areas 
+of scalability, reliability, and functionality and is currently in use at tens of thousands of 
+leading government, academic, and commercial sites throughout the world. 
+
+TORQUE may be freely used, modified, and distributed under the constraints of the included license."
+
+pkg_file="$pkg_name-$pkg_vers.tar.gz"
+pkg_urls="http://www.adaptivecomputing.com/resources/downloads/torque/$pkg_file"
+pkg_opts="configure"
+pkg_reqs="zlib/latest papi/latest"
+pkg_uses="m4/latest autoconf/latest automake/latest $pkg_reqs"
+pkg_cflags="-I$BLDR_LOCAL_DIR/system/zlib/latest/include"
+pkg_ldflags="-L$BLDR_LOCAL_DIR/system/zlib/latest/lib"
+pkg_cfg=""
+
+if [ "$BLDR_SYSTEM_IS_OSX" -eq 1 ]
+then
+     return
+fi
+
+####################################################################################################
+# build and install pkg as local module
+####################################################################################################
+
+bldr_build_pkg --category    "cluster"      \
+               --name        "$pkg_name"    \
+               --version     "$pkg_vers"    \
+               --info        "$pkg_info"    \
+               --description "$pkg_desc"    \
+               --file        "$pkg_file"    \
+               --url         "$pkg_urls"    \
+               --uses        "$pkg_uses"    \
+               --requires    "$pkg_reqs"    \
+               --options     "$pkg_opts"    \
+               --cflags      "$pkg_cflags"  \
+               --ldflags     "$pkg_ldflags" \
+               --config      "$pkg_cfg"
+
+

pkgs/cluster/010-openmpi.sh

@@ -0,0 +1,65 @@
+#!/bin/bash
+
+####################################################################################################
+# import the BLDR system
+####################################################################################################
+
+source "bldr.sh"
+
+####################################################################################################
+# setup pkg definition and resource files
+####################################################################################################
+
+pkg_name="openmpi"
+pkg_vers="1.6"
+
+pkg_info="The Open MPI Project is an open source MPI-2 implementation that is developed and maintained by a consortium of academic, research, and industry partners."
+
+pkg_desc="The Open MPI Project is an open source MPI-2 implementation that is developed and 
+maintained by a consortium of academic, research, and industry partners. 
+
+Open MPI is therefore able to combine the expertise, technologies, and resources from all 
+across the High Performance Computing community in order to build the best MPI library available. 
+
+Open MPI offers advantages for system and software vendors, application developers and computer 
+science researchers."
+
+pkg_file="$pkg_name-$pkg_vers.tar.bz2"
+pkg_urls="http://www.open-mpi.org/software/ompi/v1.6/downloads/$pkg_file"
+pkg_opts="configure"
+pkg_reqs="zlib/latest papi/latest torque/latest"
+pkg_uses="m4/latest autoconf/latest automake/latest $pkg_reqs"
+pkg_cflags="-I$BLDR_LOCAL_DIR/system/zlib/latest/include"
+pkg_ldflags="-L$BLDR_LOCAL_DIR/system/zlib/latest/lib"
+pkg_cfg="--enable-btl-openib-failover --enable-heterogeneous --enable-mpi-thread-multiple"
+
+if [ -d $BLDR_LOCAL_DIR/cluster/torque/latest ]
+then 
+     pkg_cfg="$pkg_cfg --with-tm=\"$BLDR_LOCAL_DIR/cluster/torque/latest\""
+fi
+
+if [ "$BLDR_SYSTEM_IS_OSX" -eq 1 ]
+then
+     # Building v1.5.4 on OSX causes error due to missing '__builtin_expect' -- disable vampire trace avoids this
+    pkg_cfg="$pkg_cfg --disable-vt "
+fi
+
+####################################################################################################
+# build and install pkg as local module
+####################################################################################################
+
+bldr_build_pkg --category    "cluster"      \
+               --name        "$pkg_name"    \
+               --version     "$pkg_vers"    \
+               --info        "$pkg_info"    \
+               --description "$pkg_desc"    \
+               --file        "$pkg_file"    \
+               --url         "$pkg_urls"    \
+               --uses        "$pkg_uses"    \
+               --requires    "$pkg_reqs"    \
+               --options     "$pkg_opts"    \
+               --cflags      "$pkg_cflags"  \
+               --ldflags     "$pkg_ldflags" \
+               --config      "$pkg_cfg"
+
+

pkgs/cluster/020-mvapich2.sh

@@ -0,0 +1,69 @@
+#!/bin/bash
+
+####################################################################################################
+# import the BLDR system
+####################################################################################################
+
+source "bldr.sh"
+
+####################################################################################################
+# setup pkg definition and resource files
+####################################################################################################
+
+pkg_name="mvapich2"
+pkg_vers="1.8"
+
+pkg_info="MVAPICH2 (MPI-2 over OpenFabrics-IB, OpenFabrics-iWARP, PSM, uDAPL and TCP/IP)."
+
+pkg_desc="MVAPICH2 (MPI-2 over OpenFabrics-IB, OpenFabrics-iWARP, PSM, uDAPL and TCP/IP)
+
+This is an MPI-2 implementation (conforming to MPI 2.2 standard) which includes all 
+MPI-1 features. It is based on MPICH2 and MVICH. The latest release is MVAPICH2 1.8 
+(includes MPICH2 1.4.1p1). It is available under BSD licensing."
+
+pkg_file="$pkg_name-$pkg_vers.tgz"
+pkg_urls="http://mvapich.cse.ohio-state.edu/download/mvapich2/$pkg_file"
+pkg_opts="configure"
+pkg_reqs="zlib/latest papi/latest"
+pkg_uses="m4/latest autoconf/latest automake/latest $pkg_reqs"
+pkg_cflags="-I$BLDR_LOCAL_DIR/system/zlib/latest/include"
+pkg_ldflags="-L$BLDR_LOCAL_DIR/system/zlib/latest/lib"
+
+pkg_cfg=""
+if [ -d /usr/local/cuda ]
+then
+     pkg_cfg="$pkg_cfg --with-cuda=/usr/local/cuda"
+     pkg_cfg="$pkg_cfg --with-cuda-include=/usr/local/cuda/include"
+     pkg_cfg="$pkg_cfg --with-cuda-libpath=/usr/local/cuda/lib64"
+fi
+
+pkg_cfg="$pkg_cfg --enable-threads=runtime"
+pkg_cfg="$pkg_cfg --with-thread-package=posix"
+pkg_cfg="$pkg_cfg --enable-romio"
+pkg_cfg="$pkg_cfg --enable-cxx"
+
+if [ "$BLDR_SYSTEM_IS_OSX" -eq 1 ]
+then
+     # Building v1.5.4 on OSX causes error due to missing '__builtin_expect' -- disable vampire trace avoids this
+    pkg_cfg="$pkg_cfg --disable-vt "
+fi
+
+####################################################################################################
+# build and install pkg as local module
+####################################################################################################
+
+bldr_build_pkg --category    "cluster"      \
+               --name        "$pkg_name"    \
+               --version     "$pkg_vers"    \
+               --info        "$pkg_info"    \
+               --description "$pkg_desc"    \
+               --file        "$pkg_file"    \
+               --url         "$pkg_urls"    \
+               --uses        "$pkg_uses"    \
+               --requires    "$pkg_reqs"    \
+               --options     "$pkg_opts"    \
+               --cflags      "$pkg_cflags"  \
+               --ldflags     "$pkg_ldflags" \
+               --config      "$pkg_cfg"
+
+

pkgs/system/070-gettext.sh

@@ -44,8 +44,8 @@ pkg_cfg="--with-gnu-ld --without-emacs"
 pkg_cfg="$pkg_cfg --with-included-glib"
 pkg_cfg="$pkg_cfg --with-included-libunistring"
 pkg_cfg="$pkg_cfg --with-included-libcroco"
-pkg_cfg="$pkg_cfg --with-libiconv-prefix=$BLDR_LOCAL_DIR/system/libiconv"
-pkg_cfg="$pkg_cfg --with-libxml2-prefix=$BLDR_LOCAL_DIR/system/libxml2"
+pkg_cfg="$pkg_cfg --with-libiconv-prefix=$BLDR_LOCAL_DIR/system/libiconv/latest"
+pkg_cfg="$pkg_cfg --with-libxml2-prefix=$BLDR_LOCAL_DIR/system/libxml2/latest"
 
 pkg_patch=""
 

pkgs/system/100-papi.sh

@@ -0,0 +1,57 @@
+#!/bin/bash
+
+####################################################################################################
+# import the BLDR system
+####################################################################################################
+
+source "bldr.sh"
+
+####################################################################################################
+# setup pkg definition and resource files
+####################################################################################################
+
+pkg_name="papi"
+pkg_vers="4.4.0"
+
+pkg_info="The Performance API (PAPI) project specifies a standard application programming interface (API) for accessing hardware performance counters available on most modern microprocessors."
+
+pkg_desc="The Performance API (PAPI) project specifies a standard application programming interface 
+(API) for accessing hardware performance counters available on most modern microprocessors. 
+
+These counters exist as a small set of registers that count Events, occurrences of specific signals 
+related to the processor's function. Monitoring these events facilitates correlation between the 
+structure of source/object code and the efficiency of the mapping of that code to the underlying 
+architecture. This correlation has a variety of uses in performance analysis including hand tuning, 
+compiler optimization, debugging, benchmarking, monitoring and performance modeling. In addition, 
+it is hoped that this information will prove useful in the development of new compilation technology 
+as well as in steering architectural development towards alleviating commonly occurring bottlenecks 
+in high performance computing."
+
+pkg_file="$pkg_name-$pkg_vers.tar.gz"
+pkg_urls="http://icl.cs.utk.edu/projects/papi/downloads/$pkg_file"
+pkg_opts="configure"
+pkg_uses="m4/latest autoconf/latest automake/latest libtool/latest"
+pkg_reqs=""
+pkg_cflags=""
+pkg_ldflags=""
+pkg_cfg=""
+
+####################################################################################################
+# build and install pkg as local module
+####################################################################################################
+
+bldr_build_pkg --category    "system"       \
+               --name        "$pkg_name"    \
+               --version     "$pkg_vers"    \
+               --info        "$pkg_info"    \
+               --description "$pkg_desc"    \
+               --file        "$pkg_file"    \
+               --url         "$pkg_urls"    \
+               --uses        "$pkg_uses"    \
+               --requires    "$pkg_reqs"    \
+               --options     "$pkg_opts"    \
+               --cflags      "$pkg_cflags"  \
+               --ldflags     "$pkg_ldflags" \
+               --config      "$pkg_cfg"     \
+               --config-path "src"
+

system/bldr.sh

@@ -1083,7 +1083,8 @@ function bldr_boot_pkg()
             bldr_log_cmd "patch -p1 < $patch_file"
             bldr_log_split
 
-            patch -p1 < $patch_file || bldr_bail "Failed to apply patch '$patch_file' to package '$pkg_name/$pkg_vers'!"
+            patch -p1 -N < $patch_file
+            #  || bldr_bail "Failed to apply patch '$patch_file' to package '$pkg_name/$pkg_vers'!"
             bldr_log_split
         fi
     done