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We should either warn users, or probably provide a merging solution and not let things trickle into downstream analysis. I do not know why the following is not true, but I believe it is upstream of this package
BART_data <- retrieve_VST_data(site = "BART")
# Verify the same individual ID in the same year doesn't have more than one height
multiple_heights<-BART_data[[3]] %>% group_by(individualID,eventID) %>% summarize(n=length(unique(height))) %>% filter(n>1)
> expect_equal(nrow(multiple_heights), 0)
Error: nrow(multiple_heights) not equal to 0.
1/1 mismatches
[1] 104 - 0 == 104
> vst[[3]] %>% filter(individualID=="NEON.PLA.D01.BART.00105")
uid namedLocation date eventID domainID siteID plotID subplotID
1 1d8ae27f-ea73-4c70-bc30-023552748106 BART_047.basePlot.vst 2015-09-03 vst_BART_2015 D01 BART BART_047 NA
2 71f8056f-3aea-4037-a74e-9a8ccf92c56b BART_047.basePlot.vst 2016-08-31 vst_BART_2016 D01 BART BART_047 NA
3 a74a9509-1e3e-46a7-866f-a80e2608bd3c BART_047.basePlot.vst 2017-09-12 vst_BART_2017 D01 BART BART_047 NA
4 aadaeaf0-be3e-4ab3-a3a3-ffe68d304fae BART_047.basePlot.vst 2018-08-20 vst_BART_2018 D01 BART BART_047 NA
5 0964ee3a-e558-4cb1-8689-303773d58514 BART_047.basePlot.vst 2018-08-20 vst_BART_2018 D01 BART BART_047 NA
individualID tempShrubStemID tagStatus growthForm plantStatus stemDiameter measurementHeight height
1 NEON.PLA.D01.BART.00105 NA <NA> single bole tree Live 27.1 130 16.8
2 NEON.PLA.D01.BART.00105 NA ok single bole tree Live 27.0 130 16.5
3 NEON.PLA.D01.BART.00105 NA ok single bole tree Live 26.8 130 16.4
4 NEON.PLA.D01.BART.00105 NA ok single bole tree Live 27.0 130 15.7
5 NEON.PLA.D01.BART.00105 NA ok single bole tree Live 28.1 130 16.6
baseCrownHeight breakHeight breakDiameter maxCrownDiameter ninetyCrownDiameter canopyPosition shape basalStemDiameter
1 NA NA NA NA NA <NA> NA
2 NA NA NA NA NA <NA> NA
3 NA NA NA NA NA <NA> NA
4 NA NA NA NA NA <NA> NA
5 NA NA NA NA NA <NA> NA
basalStemDiameterMsrmntHeight maxBaseCrownDiameter ninetyBaseCrownDiameter remarks recordedBy
1 NA NA NA ccahill@field-ops.org
2 NA NA NA mday@field-ops.org
3 NA NA NA jbreault@field-ops.org
4 NA NA NA jlerner@battelleecology.org
5 NA NA NA jlerner@battelleecology.org
measuredBy dataQF
1 dcrandall@neoninc.org legacyData
2 ramundson@field-ops.org legacyData
3 llukas@battelleecology.org legacyData
4 llukas@battelleecology.org <NA>
5 llukas@battelleecology.org <NA>
2018 has two different heights.
The text was updated successfully, but these errors were encountered:
Good catch, and thanks for contacting NEON about this. Looks like there are indeed duplicates.
One thought I had was that multi-bole trees have multiple entries in the woody vegetation structure data set and that this could potentially be causing an issue, but the individual IDs have a letter on the end to indicate this: NEON.PLA.D01.BART.00226A, NEON.PLA.D01.BART.00226B, etc. Just something to keep in mind, since individual bole entries don't have all of the measurements as a single-bole tree.
I'll cc you, they are super aware, the problems are pretty expansive, in the full dataset i see , ~2000 duplicate locations (take most recent), 9000 duplicate IDs with different heights from the same event ID, hundreds of between year height changes of more than 6m. I'm trying to make a vignette here that i'll clean up.
We should either warn users, or probably provide a merging solution and not let things trickle into downstream analysis. I do not know why the following is not true, but I believe it is upstream of this package
Debugging, this is coming from NeonUtilities
2018 has two different heights.
The text was updated successfully, but these errors were encountered: