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API documentation

CluBCpG was built to be, primarily, a command-line based set of tools for the analysis of WGBS data. However, the package does include a few APIs which may be useful for users wanting to interact with their data more programmatically or extend the functions of CluBCpG.

ClubCpG APIs

.. automodule:: clubcpg.ParseBam
   :members:
   :special-members: __init__


.. automodule:: clubcpg.CalculateBinCoverage
    :members:
    :special-members: __init__


.. automodule:: clubcpg.ClusterReads
   :members:
   :special-members: __init__


.. automodule:: clubcpg.ConnectToCpGNet
   :members:
   :special-members: __init__



.. automodule:: clubcpg.Imputation
   :members:
   :special-members: __init__

PReLIM APIs

.. automodule:: clubcpg_prelim.PReLIM
   :members:
   :special-members: __init__