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git-svn-id: https://svn.r-project.org/R/branches/R-Win-CMD@28362 00db46b3-68df-0310-9c12-caf00c1e9a41
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1 parent 99eb0f7 commit 38a8f1226a07d1a013f33ac57354aac48e6f28bc murdoch committed Feb 20, 2004
Showing with 611 additions and 498 deletions.
  1. +52 −93 BUGS
  2. +31 −15 FAQ
  3. +10 −10 Makefile.in
  4. +13 −0 NEWS
  5. +2 −2 acinclude.m4
  6. +2 −2 aclocal.m4
  7. +43 −49 configure
  8. +3 −1 configure.ac
  9. +1 −2 date-stamp
  10. +1 −1 doc/html/R-admin.html
  11. +1 −1 doc/manual/Makefile.in
  12. +30 −12 doc/manual/R-FAQ.texi
  13. +4 −4 doc/manual/R-exts.texi
  14. +2 −2 m4/R.m4
  15. +2 −1 share/perl/R/Rdconv.pm
  16. +4 −0 src/gnuwin32/CHANGES
  17. +2 −2 src/gnuwin32/installer/INSTALL
  18. +7 −1 src/gnuwin32/installer/JRins.pl
  19. +1 −0 src/include/Defn.h
  20. +12 −6 src/include/Rinternals.h
  21. +4 −1 src/library/base/R/array.R
  22. +2 −2 src/library/base/man/names.Rd
  23. +0 −26 src/library/ctest/Makefile.in
  24. +0 −32 src/library/eda/Makefile.in
  25. +2 −1 src/library/graphics/Makefile.in
  26. +1 −1 src/library/graphics/R/unix/quartz.R
  27. +0 −26 src/library/lqs/Makefile.in
  28. +3 −2 src/library/methods/man/RMethodUtils.Rd
  29. +0 −27 src/library/mle/Makefile.in
  30. +1 −27 src/library/modreg/Makefile.in
  31. +1 −27 src/library/mva/Makefile.in
  32. +0 −26 src/library/nls/Makefile.in
  33. +6 −6 src/library/profile/Rprofile.unix
  34. +2 −0 src/library/stats/R/factanal.R
  35. +4 −4 src/library/stats/man/varimax.Rd
  36. +0 −26 src/library/stepfun/Makefile.in
  37. +2 −2 src/library/tools/R/QC.R
  38. +5 −5 src/library/tools/R/utils.R
  39. +0 −26 src/library/ts/Makefile.in
  40. +24 −4 src/main/array.c
  41. +6 −6 src/main/builtin.c
  42. +1 −1 src/main/dstruct.c
  43. +2 −2 src/main/memory.c
  44. +3 −3 src/main/subassign.c
  45. +25 −0 src/main/util.c
  46. +2 −2 src/modules/aqua/Makefile.in
  47. +3 −1 src/modules/aqua/aquaconsole.c
  48. +264 −7 src/unix/devQuartz.c
  49. +9 −0 tests/reg-tests-2.R
  50. +16 −1 tests/reg-tests-2.Rout.save
View
145 BUGS
@@ -266,6 +266,10 @@ Subject: return() undocumented
From: Scot@Wilcoxon.Org
Date: Sat, 10 Jan 2004 16:12:16 +0100 (CET)
..He meant in R-lang
+* PR# 6570 *
+Subject: Spelling
+From: Peter Dalgaard <p.dalgaard@biostat.ku.dk>
+Date: 11 Feb 2004 01:13:32 +0100
Directory: Graphics
@@ -575,15 +579,6 @@ Date: Tue, 22 Apr 2003 06:21:19 +0200 (MET DST)
..According to Simon Urbanek this is a java security issue. With RAqua a good
..alternative is starting HTML
..help and then using help.search() or Help|Search Help on...
-* PR# 5529 *
-Subject: R OS X panther?
-From: Bronwyn Carlisle <bronwyn@biocadmin.otago.ac.nz>
-Date: Fri, 5 Dec 2003 12:47:55 +1300
-..Probably not an R bug
-* PR# 5674 *
-Subject: R.app should ignore -psn command line argument
-From: ellis@stat.harvard.edu
-Date: Wed, 10 Dec 2003 19:18:15 +0100 (CET)
* PR# 6438 *
Subject: R crash
From: sstoddar@uiuc.edu
@@ -817,87 +812,51 @@ Date: Tue, 16 Dec 2003 08:13:17 +0100 (CET)
Subject: Bug
From: huan.huang@bnpparibas.com
Date: Fri, 6 Feb 2004 18:40:05 +0100 (CET)
-* PR# 6561 *
-Subject: Returned mail
-Subject: Mail Delivery System
-From: mailgate01@metso.com
-From: r-bugs@r-project.org
-Date: Mon, 09 Feb 2004 15:13:09 -0600
-Date: Mon, 9 Feb 2004 16:08:45 -0500
-* PR# 6562 *
-Subject: FWD: Have Pills V|a|lium + v|@GRa ~ XAna/x/ ` %RND_MED_VIC+0DIN $ Pnt3rmin ( Som@ PI6nH
-From: "emerson orton" <bj.orton@rr.com>
-Date: Mon, 09 Feb 2004 09:36:04 -0400
-* PR# 6563 *
-Subject: Re:
-From: "Jeremiah Pryor" <veakadwteqdta@europe.com>
-Date: Tue, 10 Feb 2004 03:31:37 -0600
-* PR# 6564 *
-Subject: Business Proposition:Respond ASAP
-From: Bola Adeosho <'bolaadeosho@gawab.com>
-Date: Tue, 10 Feb 2004 13:00:26 +0000 (GMT)
-* PR# 6565 *
-Subject: V1agra has been replaced by the more effective Cia1is! zBX lU
-From: "Laura" <Vanessa@excite.com>
-Date: Wed, 11 Feb 2004 06:07:28 +0400
-* PR# 6566 *
-Subject: Returned mail: see transcript for details
-Subject: Status
-From: Mail Delivery Subsystem <MAILER-DAEMON@ual.es>
-From: r-bugs@biostat.ku.dk
-Date: Tue, 10 Feb 2004 18:05:09 +0100 (MET)
-Date: Tue, 10 Feb 2004 18:06:41 +0100
-* PR# 6567 *
-Subject: Virus Alert
-From: antivirus@ual.es
-Date: Tue, 10 Feb 2004 18:05:17 +0100
-* PR# 6568 *
-Subject: Virus Alert
-From: antivirus@ual.es
-Date: Tue, 10 Feb 2004 18:39:28 +0100
-* PR# 6569 *
-Subject: Re:
-From: "Joe Hagan" <jtlvujcybsfv@seductive.com>
-Date: Tue, 10 Feb 2004 16:51:46 -0600
-* PR# 6570 *
-Subject: Spelling
-From: Peter Dalgaard <p.dalgaard@biostat.ku.dk>
-Date: 11 Feb 2004 01:13:32 +0100
-* PR# 6571 *
-Subject: sugper viagrga slayer bunts
-From: "R.n.griffiths" <bobbyannotated@asiamail.com>
-Date: Wed, 11 Feb 2004 06:44:15 +0000
-* PR# 6572 *
-Subject: Mail delivery failed: returning message to sender
-Subject: Server Report
-From: Mail Delivery System <Mailer-Daemon@lfallback1.lnd.ops.eu.uu.net>
-From: r-bugs@biostat.ku.dk
-Date: Wed, 11 Feb 2004 07:04:44 +0000
-Date: Wed, 11 Feb 2004 01:32:20 -0500
-* PR# 6573 *
-Subject: Re: Hello
-From: "Quanta IT" <void@void.com>
-Date: Wed, 11 Feb 2004 10:02:15 +0100
-* PR# 6574 *
-Subject: Re: Hello
-From: "Zancolo' Olga - Direzione Amministrativa (auto reply)" <olga.zancolo@unimib.it>
-Date: Wed, 11 Feb 2004 12:37:09 +0100
-* PR# 6575 *
-Subject: V�RUS ENCONTRADO NA MENSAGEM DESTINADA A sofia@facic.fuom.br
-Subject: Hi
-From: admlab@facic.fuom.br
-From: r-bugs@r-project.org
-Date: Thu, 12 Feb 2004 04:54:48 -0300
-Date: Fri, 2 Feb 2001 05:02:18 -0200
-* PR# 6576 *
-Subject: HEALTH CARE SECTOR: NEWS On Tubercin and FDA Testing--R-bugs 37608693
-From: "Helen Hammond" <ktkqglbfw@personal.ro>
-Date: Fri, 13 Feb 2004 00:20:35 -0500
-* PR# 6577 *
-Subject: Re: incommunicable boylston
-From: "Edward Potter" <sxhaaxyb@winning.com>
-Date: Fri, 13 Feb 2004 07:54:02 -0600
-* PR# 6578 *
-Subject: death hut ababa barth
-From: "Donn Brandon" <pherfhkhrcjjb@att.net>
-Date: Fri, 13 Feb 2004 10:04:01 -0500
+* PR# 6588 *
+Subject: limitation
+From: Ming Lo <fnlo@ust.hk>
+Date: Mon, 16 Feb 2004 20:24:54 +0800 (HKT)
+* PR# 6591 *
+Subject: R-bugs I found your addie ano
+From: "Lee Law" <NEWVWD@wsdc3sx.com>
+Date: Tue, 17 Feb 2004 15:56:21 -0400
+* PR# 6592 *
+Subject: Youre not gonna believe this man!
+From: "Natalie ." <dygmhnsdvvdhk@apexmail.com>
+Date: Mon, 16 Feb 2004 22:52:41 -0600
+* PR# 6593 *
+Subject: Macintosh
+From: dspublic@earthlink.net
+Date: Tue, 17 Feb 2004 06:10:00 +0100 (CET)
+* PR# 6594 *
+Subject: typo in help(names)?
+From: weigand@mayo.edu
+Date: Tue, 17 Feb 2004 16:24:08 +0100 (CET)
+* PR# 6595 *
+Subject: Your message to R-announce awaits moderator approval
+From: r-announce-bounces@stat.math.ethz.ch
+Date: Tue, 17 Feb 2004 16:12:30 +0100
+* PR# 6596 *
+Subject: "Out of memory" while building R with perl 5.8.2
+From: vangyzen@stat.duke.edu
+Date: Tue, 17 Feb 2004 20:32:01 +0100 (CET)
+* PR# 6597 *
+Subject: summary.rpart() in rpart package
+From: "Chen, Feiming" <feiming_chen@spectramarketing.com>
+Date: Tue, 17 Feb 2004 17:07:02 -0600
+* PR# 6598 *
+Subject: src/scripts/Makefile bug
+From: Atro Tossavainen <atossava@cc.helsinki.fi>
+Date: Wed, 18 Feb 2004 14:45:24 +0200 (EET)
+* PR# 6599 *
+Subject: warning
+From: bw@bwdigitronik.ch
+Date: Wed, 18 Feb 2004 16:53:58 +0100
+* PR# 6600 *
+Subject: R would not quit (bug?)
+From: Michael Herron <Michael.C.Herron@Dartmouth.EDU>
+Date: Wed, 18 Feb 2004 14:27:07 -0500
+* PR# 6601 *
+Subject: Process R segmentation with strsplit()
+From: "wolski" <wolski@molgen.mpg.de>
+Date: Thu, 19 Feb 2004 19:05:49 +0100
View
46 FAQ
@@ -4,7 +4,7 @@ END-INFO-DIR-ENTRY
R FAQ
Frequently Asked Questions on R
-Version 1.8-40, 2004-02-13
+Version 1.8-42, 2004-02-19
ISBN 3-900051-01-1
Kurt Hornik
@@ -1158,17 +1158,16 @@ to a web server. It is easily installed using Apache under Linux and in
principle should run on any platform that supports R and a web server
provided that the installer has the necessary security permissions.
- *Rcgi* is a CGI WWW interface to R by Mark J. Ray
-<mjr@stats.mth.uea.ac.uk>. It had the ability to use "embedded code": you
-could mix user input and code, allowing the HTML author to do anything from
-load in data sets to enter most of the commands for users without writing
-CGI scripts. Graphical output was possible in PostScript or GIF formats
-and the executed code was presented to the user for revision. However, it
-is not clear if the project is still active and recent attempts to contact
-the author or find the package have failed. Currently, a modified version
-of *Rcgi* by Mai Zhou <mai@ms.uky.edu> (actually, two versions: one with
-(bitmap) graphics and one without) as well as the original code are
-available from `http://www.ms.uky.edu/~statweb'.
+ *Rcgi* is a CGI WWW interface to R by MJ Ray <mjr@dsl.pipex.com>. It
+had the ability to use "embedded code": you could mix user input and code,
+allowing the HTML author to do anything from load in data sets to enter
+most of the commands for users without writing CGI scripts. Graphical
+output was possible in PostScript or GIF formats and the executed code was
+presented to the user for revision. However, it is not clear if the
+project is still active. Currently, a modified version of *Rcgi* by Mai
+Zhou <mai@ms.uky.edu> (actually, two versions: one with (bitmap) graphics
+and one without) as well as the original code are available from
+`http://www.ms.uky.edu/~statweb'.
5 R Add-On Packages
*******************
@@ -1258,6 +1257,9 @@ distributions of R.)
*BradleyTerry*
Specify and fit the Bradley-Terry model and structured versions.
+*BsMD*
+ Bayes screening and model discrimination follow-up designs.
+
*CDNmoney*
Components of Canadian monetary aggregates.
@@ -1870,6 +1872,10 @@ distributions of R.)
*hdf5*
Interface to the NCSA HDF5 library.
+*hett*
+ Functions for the fitting and summarizing of heteroscedastic
+ t-regression.
+
*hier.part*
Hierarchical Partitioning: variance partition of a multivariate data
set.
@@ -1906,6 +1912,10 @@ distributions of R.)
*its*
An S4 class for handling irregular time series.
+*kernlab*
+ Kernel-based machine learning methods including support vector
+ machines. (Currently in `1.9.0/Other'.)
+
*knnTree*
Construct or predict with k-nearest-neighbor classifiers, using
cross-validation to select k, choose variables (by forward or
@@ -2019,9 +2029,6 @@ distributions of R.)
*mclust*
Model-based cluster analysis: the 2002 version of MCLUST.
-*mclust1998*
- Model-based cluster analysis: the 1998 version of MCLUST.
-
*mda*
Code for mixture discriminant analysis (MDA), flexible discriminant
analysis (FDA), penalized discriminant analysis (PDA), multivariate
@@ -2078,6 +2085,10 @@ distributions of R.)
Multidimensional descriptive statistics: factorial methods and
classification.
+*multinomRob*
+ Overdispersed multinomial regression using robust (LQD and tanh)
+ estimation.
+
*multiv*
Functions for hierarchical clustering, partitioning, bond energy
algorithm, Sammon mapping, PCA and correspondence analysis.
@@ -2260,6 +2271,11 @@ distributions of R.)
*randomForest*
Breiman's random forest classifier.
+*ref*
+ Functions for creating references, reading from and writing ro
+ references and a memory efficient refdata type that transparently
+ encapsulates matrices and data frames.
+
*relimp*
Functions to facilitate inference on the relative importance of
predictors in a linear or generalized linear model.
View
@@ -83,9 +83,9 @@ install: installdirs
@for f in $(INSTFILES); do \
$(INSTALL_DATA) $(srcdir)/$${f} $(rhome); \
done
-@WANT_R_FRAMEWORK_TRUE@ $(MAKE) install-R-framework
-@WANT_R_FRAMEWORK_TRUE@ sed 's/^LIBR =.*/LIBR = -framework R/' \
-@WANT_R_FRAMEWORK_TRUE@ $(top_builddir)/etc/Makeconf > $(rhome)/etc/Makeconf
+@WANT_R_FRAMEWORK_TRUE@ $(MAKE) install-R-framework
+@WANT_R_FRAMEWORK_TRUE@ @(sed 's/^LIBR =.*/LIBR = -framework R/' \
+@WANT_R_FRAMEWORK_TRUE@ $(top_builddir)/etc/Makeconf > $(rhome)/etc/Makeconf)
installdirs:
@$(MKINSTALLDIRS) $(rhome)
install-strip:
@@ -168,14 +168,14 @@ install-R-framework:
@(cd $(top_builddir)/src/modules/aqua && \
cp Info.plist "$(R_FRAMEWORK_DIR)/Versions/$(VERSION)/Resources")
@(cd "$(R_FRAMEWORK_DIR)/Versions/$(VERSION)" && \
- ln -f -s Resources/include Headers && \
- ln -f -s Resources/bin/libR.dylib R)
+ ln -f -s -h Resources/include Headers && \
+ ln -f -s -h Resources/bin/libR.dylib R)
@(cd "$(R_FRAMEWORK_DIR)/Versions" && \
- ln -f -s $(VERSION) Current)
+ ln -f -s -h $(VERSION) Current)
@(cd "$(R_FRAMEWORK_DIR)" && \
- ln -f -s Versions/Current/Headers Headers&& \
- ln -f -s Versions/Current/R R && \
- ln -f -s Versions/Current/Resources Resources)
+ ln -f -s -h Versions/Current/Headers Headers&& \
+ ln -f -s -h Versions/Current/R R && \
+ ln -f -s -h Versions/Current/Resources Resources)
@(cd "$(srcdir)/src/modules/aqua/Contents/Resources" && \
cp -R * "$(R_FRAMEWORK_DIR)/Resources/bin")
@(cd "$(R_FRAMEWORK_DIR)/Resources/bin" && \
@@ -196,6 +196,6 @@ install-aqua:
@test -f "$(R_FRAMEWORK_DIR)/Resources/bin/RAqua" \
|| (echo "please, make install-R-framework first" && exit 1)
@(cd /Applications/R.app/Contents/MacOS && \
- ln -f "$(R_FRAMEWORK_DIR)/Resources/bin/RAqua" R && \
+ ln -f -h "$(R_FRAMEWORK_DIR)/Resources/bin/RAqua" R && \
chmod 755 R)
TAGS:
View
13 NEWS
@@ -229,6 +229,9 @@ NEW FEATURES
plus many utility functions similar to those for date-times.
See ?Date.
+ o varimax() and promax() add class "loadings" to their loadings
+ component.
+
UTILITIES
@@ -268,6 +271,10 @@ C-LEVEL FACILITIES
o Salloc and Srealloc are provided in S.h as wrappers for S_alloc
and S_realloc, since current S versions use these forms.
+ o The type used for vector lengths is now R_len_t rather than
+ int, to allow this to de defined as long and so allow vectors
+ longer than 2^31 - 1 elements on 64-bit platforms.
+
DEPRECATED & DEFUNCT
@@ -306,6 +313,8 @@ INSTALLATION CHANGES
BUG FIXES
+ o minor copy-paste error in example(names) (PR#6594)
+
o contrasts() turns a logical variable into a factor. This now
always has levels c("FALSE", "TRUE") even if only one (or
none) of these occur in the variable.
@@ -408,6 +417,10 @@ BUG FIXES
o ftable() incorrectly handled arguments named "x". (PR#6541)
+ o vector(), matrix(), array() and their internal equivalents
+ report correctly that the number of elements specified was too
+ large (rather than reporting it as negative).
+
View
@@ -1619,7 +1619,7 @@ AC_EGREP_CPP([yes],
AC_DEFUN([_R_PATH_TCL_CONFIG],
[AC_MSG_CHECKING([for tclConfig.sh in library (sub)directories])
AC_CACHE_VAL([r_cv_path_TCL_CONFIG],
-[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib; do
+[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib /usr/lib64 ; do
for dir in \
${ldir} \
`ls -d ${ldir}/tcl[[8-9]].[[0-9]]* 2>/dev/null | sort -r`; do
@@ -1645,7 +1645,7 @@ fi
AC_DEFUN([_R_PATH_TK_CONFIG],
[AC_MSG_CHECKING([for tkConfig.sh in library (sub)directories])
AC_CACHE_VAL([r_cv_path_TK_CONFIG],
-[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib; do
+[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib /usr/lib64 ; do
for dir in \
${ldir} \
`ls -d ${ldir}/tk[[8-9]].[[0-9]]* 2>/dev/null | sort -r`; do
View
@@ -1289,7 +1289,7 @@ AC_EGREP_CPP([yes],
AC_DEFUN([_R_PATH_TCL_CONFIG],
[AC_MSG_CHECKING([for tclConfig.sh in library (sub)directories])
AC_CACHE_VAL([r_cv_path_TCL_CONFIG],
-[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib; do
+[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib /usr/lib64 ; do
for dir in \
${ldir} \
`ls -d ${ldir}/tcl[[8-9]].[[0-9]]* 2>/dev/null | sort -r`; do
@@ -1309,7 +1309,7 @@ fi
AC_DEFUN([_R_PATH_TK_CONFIG],
[AC_MSG_CHECKING([for tkConfig.sh in library (sub)directories])
AC_CACHE_VAL([r_cv_path_TK_CONFIG],
-[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib; do
+[for ldir in /opt/lib /sw/lib /usr/local/lib /usr/lib /lib /usr/lib64 ; do
for dir in \
${ldir} \
`ls -d ${ldir}/tk[[8-9]].[[0-9]]* 2>/dev/null | sort -r`; do
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